Ss1.1-rtra16_c15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAAATGTGACTCTCATGCTGTTAAACTTCAGCCTTGGAAAACTAGGTCTCTCATTATC ATCTATCCCAGTTGGAAGGACTTTGGGCACCTCATTTAGTTCAGGACAGTCTTGAGAATT AGAAGTATTACTATAATTTAGGGTTCCAGACCTAGGCTCTGACTGAAGGTTTTAGAGAAA AGAAGTGCATCTGTAACTGAATTGGTAAACCCCCCAAAAGGTATTTGTTGCATGGGAATA TTGTGAAAGCTGGCGACCCCATCCCCACCGCCTGCTTTGTCAGATGCAGCTGGGTTCCCT GGCCAACCCTGTATCTTACACTACTTCAGAGAAACACAAACTTGGACATGGTGCCACTGG CCCAGTTAGAGCAGTGTTAGGTGAAGGTGCTGAGGCAGCAGCTCAGAGAGCAGCTAGGTG TGCTTCACCTGGAGCAAAAGCAAACACACCTGGATTTATGAAAGTGGAAGTGGTCGTTTA CAAAAACAGCTCTCCCAGTAGGTCTGCAGTTGTTTCATTTACACACAACTCTTCAGGAAC CTCTCTGCTGTTTAAAGCAAGATATCTCTAGCCTGCTGTCTCAGTGACTCGGCCTGTTAA AGCACTTACCAGGGCTTCCACACAATTATTTATTTTGCCCTAGTTGATCTTGTTGTTTGC TGCCATTGGCATAAAACAGCCAACTGTGGCTGGTCCGGTTGTTCTTTTGTTCAATTATAA CTTGTAAACCAGTGATACCCAATCTTTTTCAAGTTAAGACACCTTACCATTGCTTATTTG ATTTTTTTCTTTTTTTCTCCCTAAAGGAAAAAAAAAGCTTTATGACATATTTATTTTTTT AATAAAACTAAGCAAAAATAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAAATGTGACTCTCATGCTGTTAAACTTCAGCCTTGGAAAACTAGGTCTCTCATTATC ATCTATCCCAGTTGGAAGGACTTTGGGCACCTCATTTAGTTCAGGACAGTCTTGAGAATT AGAAGTATTACTATAATTTAGGGTTCCAGACCTAGGCTCTGACTGAAGGTTTTAGAGAAA AGAAGTGCATCTGTAACTGAATTGGTAAACCCCCCAAAAGGTATTTGTTGCATGGGAATA TTGTGAAAGCTGGCGACCCCATCCCCACCGCCTGCTTTGTCAGATGCAGCTGGGTTCCCT GGCCAACCCTGTATCTTACACTACTTCAGAGAAACACAAACTTGGACATGGTGCCACTGG CCCAGTTAGAGCAGTGTTAGGTGAAGGTGCTGAGGCAGCAGCTCAGAGAGCAGCTAGGTG TGCTTCACCTGGAGCAAAAGCAAACACACCTGGATTTATGAAAGTGGAAGTGGTCGTTTA CAAAAACAGCTCTCCCAGTAGGTCTGCAGTTGTTTCATTTACACACAACTCTTCAGGAAC CTCTCTGCTGTTTAAAGCAAGATATCTCTAGCCTGCTGTCTCAGTGACTCGGCCTGTTAA AGCACTTACCAGGGCTTCCACACAATTATTTATTTTGCCCTAGTTGATCTTGTTGTTTGC TGCCATTGGCATAAAACAGCCAACTGTGGCTGGTCCGGTTGTTCTTTTGTTCAATTATAA CTTGTAAACCAGTGATACCCAATCTTTTTCAAGTTAAGACACCTTACCATTGCTTATTTG ATTTTTTTCTTTTTTTCTCCCTAAAGGAAAAAAAAAGCTTTATGACATATTTATTTTTTT AATAAAACTAAGCAAAAATAAAAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 723-832, - strand, RNAz p=0.745383 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 723-832, - strand, RNAz p=0.745383 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-206, gnl|bosTau2|chr1 (70849712-70849915) | |
| 1-206, gnl|canFam2|chr23 (53331041-53331985) | |
| 1-206, gnl|dasNov1|scaffold_2078 (61670-62648) | |
| 1-206, gnl|echTel1|scaffold_277998 (79843-80790) | |
| 1-206, gnl|hg17|chr3 (157905895-157906859) | |
| 1-206, gnl|Hg17|chr3 (157906314-157906520) | |
| 1-206, gnl|loxAfr1|scaffold_15738 (30275-29309) | |
| 1-206, gnl|mm7|chr3 (65654908-65655828) | |
| 1-206, gnl|Mm7|chr3 (65655315-65655506) | |
| 1-206, gnl|monDom2|scaffold_69 (1981593-1980578) | |
| 1-206, gnl|oryCun1|scaffold_179357 (72877-73809) | |
| 1-206, gnl|panTro1|chr2 (161054145-161055110) | |
| 1-206, gnl|rheMac2|chr2 (130951649-130950700) | |
| 1-206, gnl|rn3|chr2 (155287657-155288567) | |
| 216-485, gnl|bosTau2|chr1 (70849954-70850223) | |
| 216-485, gnl|canFam2|chr23 (53331041-53331985) | |
| 216-485, gnl|dasNov1|scaffold_2078 (61670-62648) | |
| 216-485, gnl|echTel1|scaffold_277998 (79843-80790) | |
| 216-485, gnl|hg17|chr3 (157905895-157906859) | |
| 216-485, gnl|Hg17|chr3 (157906556-157906826) | |
| 216-485, gnl|loxAfr1|scaffold_15738 (30275-29309) | |
| 216-485, gnl|mm7|chr3 (65654908-65655828) | |
| 216-485, gnl|Mm7|chr3 (65655543-65655798) | |
| 216-485, gnl|monDom2|scaffold_69 (1981593-1980578) | |
| 216-485, gnl|oryCun1|scaffold_179357 (72877-73809) | |
| 216-485, gnl|panTro1|chr2 (161054145-161055110) | |
| 216-485, gnl|rheMac2|chr2 (130951649-130950700) | |
| 216-485, gnl|rn3|chr2 (155287657-155288567) | |
| 488-864, gnl|bosTau2|chr1 (70850254-70850637) | |
| 488-864, gnl|Hg17|chr3 (157906857-157907242) | |
| 488-864, gnl|Mm7|chr3 (65655826-65656203) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-206, gnl|bosTau2|chr1 (70849712-70849915) | |
| 1-206, gnl|canFam2|chr23 (53331041-53331985) | |
| 1-206, gnl|dasNov1|scaffold_2078 (61670-62648) | |
| 1-206, gnl|echTel1|scaffold_277998 (79843-80790) | |
| 1-206, gnl|hg17|chr3 (157905895-157906859) | |
| 1-206, gnl|Hg17|chr3 (157906314-157906520) | |
| 1-206, gnl|loxAfr1|scaffold_15738 (30275-29309) | |
| 1-206, gnl|mm7|chr3 (65654908-65655828) | |
| 1-206, gnl|Mm7|chr3 (65655315-65655506) | |
| 1-206, gnl|monDom2|scaffold_69 (1981593-1980578) | |
| 1-206, gnl|oryCun1|scaffold_179357 (72877-73809) | |
| 1-206, gnl|panTro1|chr2 (161054145-161055110) | |
| 1-206, gnl|rheMac2|chr2 (130951649-130950700) | |
| 1-206, gnl|rn3|chr2 (155287657-155288567) | |
| 216-485, gnl|bosTau2|chr1 (70849954-70850223) | |
| 216-485, gnl|canFam2|chr23 (53331041-53331985) | |
| 216-485, gnl|dasNov1|scaffold_2078 (61670-62648) | |
| 216-485, gnl|echTel1|scaffold_277998 (79843-80790) | |
| 216-485, gnl|hg17|chr3 (157905895-157906859) | |
| 216-485, gnl|Hg17|chr3 (157906556-157906826) | |
| 216-485, gnl|loxAfr1|scaffold_15738 (30275-29309) | |
| 216-485, gnl|mm7|chr3 (65654908-65655828) | |
| 216-485, gnl|Mm7|chr3 (65655543-65655798) | |
| 216-485, gnl|monDom2|scaffold_69 (1981593-1980578) | |
| 216-485, gnl|oryCun1|scaffold_179357 (72877-73809) | |
| 216-485, gnl|panTro1|chr2 (161054145-161055110) | |
| 216-485, gnl|rheMac2|chr2 (130951649-130950700) | |
| 216-485, gnl|rn3|chr2 (155287657-155288567) | |
| 488-864, gnl|bosTau2|chr1 (70850254-70850637) | |
| 488-864, gnl|Hg17|chr3 (157906857-157907242) | |
| 488-864, gnl|Mm7|chr3 (65655826-65656203) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.267344) | |
| bla (0.248694) | |
| cut (0.169924) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| bla (0.248694) | |
| cut (0.169924) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) |