Non-Coding RNA Search

Ss1.1-rtra16_c21.5

Sequence:


               
               CCCAACTAACAACTAAATAGGAACCATGCTTGGAGGCAGAAGTCATCTTCAACACTCAAA
ATATTGGGGTCTAATTTTAAAACTTTTAAACTCACTACTGATGATTCTATACCAGGCGAA
TTTGTGCAAACACAAGAGTCTGTGCTTTTCATATACACTGTACCCCCTTGCCCTAAATCC
TTCGATCATCTGCATCCTCCAACAATAAAGCACAGAATGGATTTAATTAAGCATGCAAAT
CCTACGCCAGAATTTTGAGGGTGGGGGAGAGGAAAAGAAAGGGGAAGGAGCTGAAAATAT
AAAACCACACTAGAGAGGAAAAATGACATTCAGAAACCAACAGACAGTAAATCTCTGTTG
TTGTTCTAACTCTGCCACAAGCATGCAGTTTTGTTAAAAAGAGATGACTTAAGTTGGCAA
CAGGAATCTTCTTTTAGTAGCTTGTACCACAGTCTTGCATGTAAGTCAGATTTGGCTTAA
GTAAAGAGACTTTCCTCAAAATGAACTTCACTGGGATAATCAGCAGCATAACTGCCCTAA
AAGCACAGCACTAGCCAAAGAAGGAAATGTCTGCTTTTCTTATTGTGCCTATATTAAGAC
CAGCACAAGTACCGTGTGTTTTCCAACATTTATTGAACATGCCATATCTGTTACATATTG
TATTGGAGTCACCGATGATGTAATGATATGTTTTTCTCATTACTATAGTAGAAATCTTTT
AATGGCAAGATATTTGTGATCTAGATCTTTCCTATTAAAATAATGCCAAACACCAAATAT
GAATTTTATCATGTACACTTTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAACTAACAACTAAATAGGAACCATGCTTGGAGGCAGAAGTCATCTTCAACACTCAAA
ATATTGGGGTCTAATTTTAAAACTTTTAAACTCACTACTGATGATTCTATACCAGGCGAA
TTTGTGCAAACACAAGAGTCTGTGCTTTTCATATACACTGTACCCCCTTGCCCTAAATCC
TTCGATCATCTGCATCCTCCAACAATAAAGCACAGAATGGATTTAATTAAGCATGCAAAT
CCTACGCCAGAATTTTGAGGGTGGGGGAGAGGAAAAGAAAGGGGAAGGAGCTGAAAATAT
AAAACCACACTAGAGAGGAAAAATGACATTCAGAAACCAACAGACAGTAAATCTCTGTTG
TTGTTCTAACTCTGCCACAAGCATGCAGTTTTGTTAAAAAGAGATGACTTAAGTTGGCAA
CAGGAATCTTCTTTTAGTAGCTTGTACCACAGTCTTGCATGTAAGTCAGATTTGGCTTAA
GTAAAGAGACTTTCCTCAAAATGAACTTCACTGGGATAATCAGCAGCATAACTGCCCTAA
AAGCACAGCACTAGCCAAAGAAGGAAATGTCTGCTTTTCTTATTGTGCCTATATTAAGAC
CAGCACAAGTACCGTGTGTTTTCCAACATTTATTGAACATGCCATATCTGTTACATATTG
TATTGGAGTCACCGATGATGTAATGATATGTTTTTCTCATTACTATAGTAGAAATCTTTT
AATGGCAAGATATTTGTGATCTAGATCTTTCCTATTAAAATAATGCCAAACACCAAATAT
GAATTTTATCATGTACACTTTGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr10 (20335003-20335792)
               

               
               1-804, gnl|Hg17|chr15 (30812530-30813323)
               

               
               1-804, gnl|Mm7|chr2 (113598007-113597206)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr10 (20335003-20335792)
               

               
               1-804, gnl|Hg17|chr15 (30812530-30813323)
               

               
               1-804, gnl|Mm7|chr2 (113598007-113597206)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               tra (0.123092)

	1-804, gnl\|bosTau2\|chr10 (20335003-20335792)
	1-804, gnl\|Hg17\|chr15 (30812530-30813323)
	1-804, gnl\|Mm7\|chr2 (113598007-113597206)