Non-Coding RNA Search

Ss1.1-rtra16_c23.5

Sequence:


               
               AGGAAGGATGAGCATATTGAAAAGGAAAATAATTACACCAGTTACCTGGACAAGTTCTTT
AGCAGGAAGGAAGATACTGAAATGCTAGAAACTGAGCCGGTAGAAGATGGGAAGCTTGGG
GAGAGAGAAAATGAGGAAGGATTTCTGAATAACAGTGGGGAGTTCCTCTTTAACAAGCAG
CTTGAATCCATAGGCATCCCGCAGTTTCACAGTCCAGTTGGGTCACCGCTTAAGTCAATA
CAGGCCACATTAACACCTTCTGCTATGAAATCTTCCCCTCAGATTCCTCATAAAACATAC
AGCAGCATTCTGAAACATCTGAACTAAAAAACACTCAGCAGACATTTCTCTTTGTATTCT
TCATGAAATGTGTTTTGTCTTTTTTATTACTAGTGTTTAGTCATTTTTTTACTTGAATCA
GATGGTGTCATTTAGAAAGGATTTTATTCTTGGTTTTTAAAACCCAGACTTTTTTTTCTA
CATGTGAGAAGGTTTTCATTTTAACTGGCATGTCGTTTGCACACAAAAATAAAGAAAAGA
GCAAAATAATGCAATGCAGGAGGAGACAGAAGAAATGCACTAAGACAAGTAAAAAACATT
CTCTCATAGAACAATGATCTGTTTTACAGGAAACAAAAATTTTGCCTTGAAAATTTACAC
AGTGAGACTGTACATAATTGCATGGAAATATCTATTTTTTTTCCTAAAACATTTTTCATT
CATGAGTATTTTCAAGTTTTTCATACTGTACACATTTCTTAAAAACACATGATACCAGCA
GCAACTGAAAATGAATGCCGAATTTGGTACACATGTGTTATCTACCTCAAGGTAACAAAA
GTATGTGGCAAAACATATACCACCCATAGTGCTTCACAAATGCACTTCTATTTAGCCAGC
GTTTATTGTAGTAAACTATTCTTAATAAGATTCACTCACCGTTTATAAATGTTCTGGTAT
GCATTCTTTATAGTGAAGTGTTACTACATCACATCTTATTTATTTTAGAAAATCAGTATA
TTTTCTGTATTTAATTATAAAAAGTTAACTTAGTTTTTAAAATTTATTTGCAAATACACT
TTTCTCCTTTTGGCACTATGGTTTGTTGCCTACTTAGCTGAATATATAATGTCAGCTTAT
CCTAAGGCTGTCCACGTACTTAATTTACTTAAGTATTCATTTTAAGTAAAGAGCTCACTG
TGTATAGGAATTTGTATTTTGGAGGTGCTTGATCTATCTACAAAGAAAAATTAGGAATTA
CTTTATATAAAATGCTCCTAGAAGTCTTAATTGTGTTTATTTTTTAAAAAAAAAACTGTT
AGACTTGTGTGCATGGAAGTAATTAAGGTACATCATTATTGTAGTTTAAAAGTTGTACAT
GATAAGACATATTTTGTTTTTACTGTATGTTTTTACTGAATGATCTATTCCCCATCCCAA
GGCAAGCATGAATAAAATTAGGTTAAATGTAGCATGTGGCATTGCCGTCTCTTAGAATTT
GTTTCATCTATTTTATTTTATTGAATACTGTCTGTATCTTTGGTTATTCTGTTTGAAAAA
AAAGGACAAATAAAACGTGGCCAGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAGGATGAGCATATTGAAAAGGAAAATAATTACACCAGTTACCTGGACAAGTTCTTT
AGCAGGAAGGAAGATACTGAAATGCTAGAAACTGAGCCGGTAGAAGATGGGAAGCTTGGG
GAGAGAGAAAATGAGGAAGGATTTCTGAATAACAGTGGGGAGTTCCTCTTTAACAAGCAG
CTTGAATCCATAGGCATCCCGCAGTTTCACAGTCCAGTTGGGTCACCGCTTAAGTCAATA
CAGGCCACATTAACACCTTCTGCTATGAAATCTTCCCCTCAGATTCCTCATAAAACATAC
AGCAGCATTCTGAAACATCTGAACTAAAAAACACTCAGCAGACATTTCTCTTTGTATTCT
TCATGAAATGTGTTTTGTCTTTTTTATTACTAGTGTTTAGTCATTTTTTTACTTGAATCA
GATGGTGTCATTTAGAAAGGATTTTATTCTTGGTTTTTAAAACCCAGACTTTTTTTTCTA
CATGTGAGAAGGTTTTCATTTTAACTGGCATGTCGTTTGCACACAAAAATAAAGAAAAGA
GCAAAATAATGCAATGCAGGAGGAGACAGAAGAAATGCACTAAGACAAGTAAAAAACATT
CTCTCATAGAACAATGATCTGTTTTACAGGAAACAAAAATTTTGCCTTGAAAATTTACAC
AGTGAGACTGTACATAATTGCATGGAAATATCTATTTTTTTTCCTAAAACATTTTTCATT
CATGAGTATTTTCAAGTTTTTCATACTGTACACATTTCTTAAAAACACATGATACCAGCA
GCAACTGAAAATGAATGCCGAATTTGGTACACATGTGTTATCTACCTCAAGGTAACAAAA
GTATGTGGCAAAACATATACCACCCATAGTGCTTCACAAATGCACTTCTATTTAGCCAGC
GTTTATTGTAGTAAACTATTCTTAATAAGATTCACTCACCGTTTATAAATGTTCTGGTAT
GCATTCTTTATAGTGAAGTGTTACTACATCACATCTTATTTATTTTAGAAAATCAGTATA
TTTTCTGTATTTAATTATAAAAAGTTAACTTAGTTTTTAAAATTTATTTGCAAATACACT
TTTCTCCTTTTGGCACTATGGTTTGTTGCCTACTTAGCTGAATATATAATGTCAGCTTAT
CCTAAGGCTGTCCACGTACTTAATTTACTTAAGTATTCATTTTAAGTAAAGAGCTCACTG
TGTATAGGAATTTGTATTTTGGAGGTGCTTGATCTATCTACAAAGAAAAATTAGGAATTA
CTTTATATAAAATGCTCCTAGAAGTCTTAATTGTGTTTATTTTTTAAAAAAAAAACTGTT
AGACTTGTGTGCATGGAAGTAATTAAGGTACATCATTATTGTAGTTTAAAAGTTGTACAT
GATAAGACATATTTTGTTTTTACTGTATGTTTTTACTGAATGATCTATTCCCCATCCCAA
GGCAAGCATGAATAAAATTAGGTTAAATGTAGCATGTGGCATTGCCGTCTCTTAGAATTT
GTTTCATCTATTTTATTTTATTGAATACTGTCTGTATCTTTGGTTATTCTGTTTGAAAAA
AAAGGACAAATAAAACGTGGCCAGCAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50402819|gb|AAT76632.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50402819|gb|AAT76632.1|

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               957-1596, gnl|bosTau2|chr15 (6179215-6179857)
               

               
               957-1596, gnl|Hg17|chr15 (50145112-50145750)
               

               
               957-1596, gnl|Mm7|chr9 (75424547-75423933)
               


               
               1115-1266, gnl|bosTau2|chr13 (27557200-27557351)
               

               
               1115-1266, gnl|Hg17|chr15 (50145274-50145429)
               


               
               1321-1471, gnl|bosTau2|chr13 (27557612-27557760)
               

               
               1321-1471, gnl|Hg17|chr15 (50145485-50145633)
               

               
               1321-1471, gnl|Mm7|chr9 (75424207-75424045)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               957-1596, gnl|bosTau2|chr15 (6179215-6179857)
               

               
               957-1596, gnl|Hg17|chr15 (50145112-50145750)
               

               
               957-1596, gnl|Mm7|chr9 (75424547-75423933)
               


               
               1115-1266, gnl|bosTau2|chr13 (27557200-27557351)
               

               
               1115-1266, gnl|Hg17|chr15 (50145274-50145429)
               


               
               1321-1471, gnl|bosTau2|chr13 (27557612-27557760)
               

               
               1321-1471, gnl|Hg17|chr15 (50145485-50145633)
               

               
               1321-1471, gnl|Mm7|chr9 (75424207-75424045)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               tra (0.61546)
               

               
               tbr (0.462535)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               jej (0.296765)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.61546)
               

               
               tbr (0.462535)
               

               
               ill (0.351185)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               jej (0.296765)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	957-1596, gnl\|bosTau2\|chr15 (6179215-6179857)
	957-1596, gnl\|Hg17\|chr15 (50145112-50145750)
	957-1596, gnl\|Mm7\|chr9 (75424547-75423933)

	1115-1266, gnl\|bosTau2\|chr13 (27557200-27557351)
	1115-1266, gnl\|Hg17\|chr15 (50145274-50145429)

	1321-1471, gnl\|bosTau2\|chr13 (27557612-27557760)
	1321-1471, gnl\|Hg17\|chr15 (50145485-50145633)
	1321-1471, gnl\|Mm7\|chr9 (75424207-75424045)

	tra (0.61546)
	tbr (0.462535)
	ill (0.351185)
	eye (0.341006)
	vin (0.332557)
	jej (0.296765)
	cte (0.29274)
	lin (0.291206)
	ret (0.257467)
	sin (0.174948)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	hlv (0.139256)
	nca (0.136874)
	nmm (0.132802)
	kid (0.129735)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)