Non-Coding RNA Search

Ss1.1-rtra17_a4.5

Sequence:


               
               TATGTTCATGCTTATAGCAGCAAAATCTGGAATGAGGCAGCATCTTACAGACTTGCCACC
TATGGATCCAGGGTGGTGGAGGGGGACTTGGTCTGTTTGGAGGAAGATGTTGACGATGAG
CATTTACCAAGTAGTAAAGTTCATCTGGTAACTGAAGAAGATGAATCAGCTAATACATAT
GCAATACATCAGGTGGTTCTTCCAGTGCTTGGATACAATATTCAGTATCCAAAGAACAAA
GTAGGGCAGTGGTACCAGGAGGTACTCAGCAGAGATGGACTACAAACTTGTAGATTTAAA
ATACCTCCTCTGAAACTGAATGTTCCGGGATGCTATAGAAAGATTTTGAAACATCCCCAT
AATCTCTCATACCAACTAATAGAAGACGCTGATATTGATGTCAAAAAGGACGGTTCTCAC
ATCGACGAAGCAACTTTATCTCTTTTGATCTCTTTTGATCTTGATGCTTCCTGTTATGCC
ACAGTCTGTCTGAGGGAAATAATGAAGCATGACTTTTAAAACCAATACCCTTGATATAAA
CGGGTATGTGCCATTTTTTAAAGGAAAGGGAGTTAAAATTTCTTGAGCATCTACCATGTA
CTAGGAACTTTATAATCGTTGTCTCCTTTGATTACATGGCATCCTGATGAAGTAGAAGTT
GATATTAAACATTCCAAAGGATGTACACCTAGTAAGTGTCAGATCTGAATTTAAGACTTT
TTGTTCTTTCTATGATCTAATGTCTCAGTGACCTTTATTCTGTGTTGCAAAAGTTGTACT
CTTTCTGGATTATTAGGAACATATACTGCCAGATAACATTAAAGAAGGTAACATTACAAA
ATATTCTTGGGATAATGTTTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTTCATGCTTATAGCAGCAAAATCTGGAATGAGGCAGCATCTTACAGACTTGCCACC
TATGGATCCAGGGTGGTGGAGGGGGACTTGGTCTGTTTGGAGGAAGATGTTGACGATGAG
CATTTACCAAGTAGTAAAGTTCATCTGGTAACTGAAGAAGATGAATCAGCTAATACATAT
GCAATACATCAGGTGGTTCTTCCAGTGCTTGGATACAATATTCAGTATCCAAAGAACAAA
GTAGGGCAGTGGTACCAGGAGGTACTCAGCAGAGATGGACTACAAACTTGTAGATTTAAA
ATACCTCCTCTGAAACTGAATGTTCCGGGATGCTATAGAAAGATTTTGAAACATCCCCAT
AATCTCTCATACCAACTAATAGAAGACGCTGATATTGATGTCAAAAAGGACGGTTCTCAC
ATCGACGAAGCAACTTTATCTCTTTTGATCTCTTTTGATCTTGATGCTTCCTGTTATGCC
ACAGTCTGTCTGAGGGAAATAATGAAGCATGACTTTTAAAACCAATACCCTTGATATAAA
CGGGTATGTGCCATTTTTTAAAGGAAAGGGAGTTAAAATTTCTTGAGCATCTACCATGTA
CTAGGAACTTTATAATCGTTGTCTCCTTTGATTACATGGCATCCTGATGAAGTAGAAGTT
GATATTAAACATTCCAAAGGATGTACACCTAGTAAGTGTCAGATCTGAATTTAAGACTTT
TTGTTCTTTCTATGATCTAATGTCTCAGTGACCTTTATTCTGTGTTGCAAAAGTTGTACT
CTTTCTGGATTATTAGGAACATATACTGCCAGATAACATTAAAGAAGGTAACATTACAAA
ATATTCTTGGGATAATGTTTATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882433|ref|XP_581753.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882433|ref|XP_581753.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-387, - strand, RNAz p=0.566332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-387, - strand, RNAz p=0.566332

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-140, gnl|bosTau2|chr5 (23405069-23404930)
               

               
               1-140, gnl|Hg17|chr12 (42416588-42416449)
               

               
               1-140, gnl|Mm7|chr15 (94531776-94531640)
               


               
               191-864, gnl|bosTau2|chr5 (23399335-23398655)
               

               
               191-864, gnl|Hg17|chr12 (42410774-42410102)
               

               
               191-864, gnl|Mm7|chr15 (94527498-94526909)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-140, gnl|bosTau2|chr5 (23405069-23404930)
               

               
               1-140, gnl|Hg17|chr12 (42416588-42416449)
               

               
               1-140, gnl|Mm7|chr15 (94531776-94531640)
               


               
               191-864, gnl|bosTau2|chr5 (23399335-23398655)
               

               
               191-864, gnl|Hg17|chr12 (42410774-42410102)
               

               
               191-864, gnl|Mm7|chr15 (94527498-94526909)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sag (0.182715)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	1-140, gnl\|bosTau2\|chr5 (23405069-23404930)
	1-140, gnl\|Hg17\|chr12 (42416588-42416449)
	1-140, gnl\|Mm7\|chr15 (94531776-94531640)

	191-864, gnl\|bosTau2\|chr5 (23399335-23398655)
	191-864, gnl\|Hg17\|chr12 (42410774-42410102)
	191-864, gnl\|Mm7\|chr15 (94527498-94526909)

	sag (0.182715)
	fat (0.147427)
	lnt (0.142308)
	ret (0.128733)
	tra (0.123092)
	cty (0.10408)