Non-Coding RNA Search

Ss1.1-rtra17_c14.5

Sequence:


               
               TGTTGGTTTCACACTGCCTTCCAATTTGCAACAGCAACTCAGTGTTTCCTGTGGTCCCAG
AATTTTCAAAGAGGTTGAGCTGAACCTATAGCTGCACCATCAGAACAAACCAGTGGTTCT
TACATTTTAAAATGCCTCAGAATCACTTGGAGCTTACTGAAATATGTATTCCAGATATTT
AGTAAATCTGCCTATGAAGCATAATAATTCCACATTTTTAAACAAGCATTCAGGTAATTC
TGATGCAAGTGATCTGGGGGACATACATGGAGAAACACTGCCCAAGACCATATATCACAT
TTTTGTTCCTAAATACCTATGGAGTTTTCTAGGGTTTTAAGTCATGCAAAATGTTTACTT
ATTCTGAGCTTAGAGATAATGGGGAAGGTATTTTGAAGTTTTGTTTTATTTCTTTAAATT
TTTCTTTGTTCCAGGATTATGGGTATTAGTTGTTTACATTTATCTTGAGTTATCTTTGAT
GTTAAGTTAAATCTGTTGCCACTTCAGTTATAAAACCAGCCAAAATTTCCAGATGAAGGT
CAGGTTTGACCCTTTCAGAGTTATTGTACATAAAGGCTTCATCCAAAAACCATCCAGTAT
ACGTGAGCAAATACAGAAATGACACACAAGCACAACTCTCCAGATGTGGCAGTCCTTTTT
CTTTGTCGGTGTGCAAACTTTCACTGAAAGCTGCTATTTTCATCCTCCTTGTGATTGTTT
TATCTTACTTCTCCATCGTACATGTGGGTTATATACCATGTGTTAAATATGCAATAAAGT
GTTTACTGGATGCCCTTCTGAAGGGTAGTCCTTTGTAAAGCTGTACAGACTTTGCAGTTT
AAGCACAATGTGCACATGTTAGTTTTATATACAGCAAAACTTGATTTTTTGCAGATGGAA
AGGTATTTTGTTTCTATACAAAGTCAATGGATTGTTTGTGCTTAATGTAAAGCTGCTTTA
TAAAGTTGTAAAATAAAGTTTTTATCTTAAAAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGTTTCACACTGCCTTCCAATTTGCAACAGCAACTCAGTGTTTCCTGTGGTCCCAG
AATTTTCAAAGAGGTTGAGCTGAACCTATAGCTGCACCATCAGAACAAACCAGTGGTTCT
TACATTTTAAAATGCCTCAGAATCACTTGGAGCTTACTGAAATATGTATTCCAGATATTT
AGTAAATCTGCCTATGAAGCATAATAATTCCACATTTTTAAACAAGCATTCAGGTAATTC
TGATGCAAGTGATCTGGGGGACATACATGGAGAAACACTGCCCAAGACCATATATCACAT
TTTTGTTCCTAAATACCTATGGAGTTTTCTAGGGTTTTAAGTCATGCAAAATGTTTACTT
ATTCTGAGCTTAGAGATAATGGGGAAGGTATTTTGAAGTTTTGTTTTATTTCTTTAAATT
TTTCTTTGTTCCAGGATTATGGGTATTAGTTGTTTACATTTATCTTGAGTTATCTTTGAT
GTTAAGTTAAATCTGTTGCCACTTCAGTTATAAAACCAGCCAAAATTTCCAGATGAAGGT
CAGGTTTGACCCTTTCAGAGTTATTGTACATAAAGGCTTCATCCAAAAACCATCCAGTAT
ACGTGAGCAAATACAGAAATGACACACAAGCACAACTCTCCAGATGTGGCAGTCCTTTTT
CTTTGTCGGTGTGCAAACTTTCACTGAAAGCTGCTATTTTCATCCTCCTTGTGATTGTTT
TATCTTACTTCTCCATCGTACATGTGGGTTATATACCATGTGTTAAATATGCAATAAAGT
GTTTACTGGATGCCCTTCTGAAGGGTAGTCCTTTGTAAAGCTGTACAGACTTTGCAGTTT
AAGCACAATGTGCACATGTTAGTTTTATATACAGCAAAACTTGATTTTTTGCAGATGGAA
AGGTATTTTGTTTCTATACAAAGTCAATGGATTGTTTGTGCTTAATGTAAAGCTGCTTTA
TAAAGTTGTAAAATAAAGTTTTTATCTTAAAAGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               737-896, + strand, RNAz p=0.998026

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               737-896, + strand, RNAz p=0.998026

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               738-896, BP420542 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP420542.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-CF-EC1-acd-f-23-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone 
(gb|BM974870.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-1-BC1p-ayt-f-01-0-UI.s1 NCI_CGAP_Pl3 Homo sapiens cDNA clone 
(gb|BQ013222.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-1-BC1-ajl-g-12-0-UI.s1 NCI_CGAP_Pl2 Homo sapiens cDNA clone 
(gb|BU753583.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-1-BC1p-asy-d-11-0-UI.s1 NCI_CGAP_Pl3 Homo sapiens cDNA clone 
(gb|CF529609.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, CYLA_4514 cynomolgus monkey B lymphocytes library Macaca 
(gb|DW526819.1|), blast E-value=0, identity=98.74%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               738-896, BP420542 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP420542.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-CF-EC1-acd-f-23-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone 
(gb|BM974870.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-1-BC1p-ayt-f-01-0-UI.s1 NCI_CGAP_Pl3 Homo sapiens cDNA clone 
(gb|BQ013222.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-1-BC1-ajl-g-12-0-UI.s1 NCI_CGAP_Pl2 Homo sapiens cDNA clone 
(gb|BU753583.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, UI-1-BC1p-asy-d-11-0-UI.s1 NCI_CGAP_Pl3 Homo sapiens cDNA clone 
(gb|CF529609.1|), blast E-value=0, identity=98.74% 
               

               
               738-896, CYLA_4514 cynomolgus monkey B lymphocytes library Macaca 
(gb|DW526819.1|), blast E-value=0, identity=98.74%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015554, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015554, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-993, gnl|bosTau2|chr10 (10452672-10453664)
               

               
               1-993, gnl|Hg17|chr15 (67350606-67351597)
               

               
               1-993, gnl|Mm7|chr9 (62084895-62083973)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-993, gnl|bosTau2|chr10 (10452672-10453664)
               

               
               1-993, gnl|Hg17|chr15 (67350606-67351597)
               

               
               1-993, gnl|Mm7|chr9 (62084895-62083973)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.332557)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

	738-896, BP420542 Homo sapiens small intestine Homo sapiens cDNA clone (dbj\|BP420542.1\|), blast E-value=0, identity=98.74%
	738-896, UI-CF-EC1-acd-f-23-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone (gb\|BM974870.1\|), blast E-value=0, identity=98.74%
	738-896, UI-1-BC1p-ayt-f-01-0-UI.s1 NCI_CGAP_Pl3 Homo sapiens cDNA clone (gb\|BQ013222.1\|), blast E-value=0, identity=98.74%
	738-896, UI-1-BC1-ajl-g-12-0-UI.s1 NCI_CGAP_Pl2 Homo sapiens cDNA clone (gb\|BU753583.1\|), blast E-value=0, identity=98.74%
	738-896, UI-1-BC1p-asy-d-11-0-UI.s1 NCI_CGAP_Pl3 Homo sapiens cDNA clone (gb\|CF529609.1\|), blast E-value=0, identity=98.74%
	738-896, CYLA_4514 cynomolgus monkey B lymphocytes library Macaca (gb\|DW526819.1\|), blast E-value=0, identity=98.74%

	1-993, gnl\|bosTau2\|chr10 (10452672-10453664)
	1-993, gnl\|Hg17\|chr15 (67350606-67351597)
	1-993, gnl\|Mm7\|chr9 (62084895-62083973)

	vin (0.332557)
	lyg (0.266205)
	tra (0.246184)
	aor (0.195274)
	rec (0.17307)
	lin (0.145603)
	ret (0.128733)
	cty (0.10408)