Ss1.1-rtra17_e18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAGTCGCGTTTGTGATTTCTGGAGAACGCTGAGCGGGACGACGGCGGTCCAGCCGGG TCTTCCGGGCCAGGTGACGAAGAAACGGCTTCTTGGGGAGCCATCCCCCCTACCTTCCAG GCAGCCCGCAGCCCCAGGGCCTGAAGATGCTGAGATCTACGTGGAATTTTCTGAAACGTC ACAAAAAGAAATGCATCTTCCTGGGGACGGTCCTCGGAGGAATATATATCCTGGGGAAAT ATGGACAGAAGAAAATCAGAGAAATACAAGAAAGGGAGGCTGCAGAATACATTGCCCAAG CACGACGACAGTATCATTTTGAAAGTAACCAGAGGACTTGCAATATGACAGTGCTGTCCA TGCTTCCAACACTGAGAGAGGCCTTAATGCAGCAACTCAATTCTGAGAGCCTTACAGTTC TGCTAAAAAACAGGCCTTCAAACAAGCTAGAAATATGGGAGGATCTGAAGATAATAAGTT TCACAAGAAGTATCGTAGCTGTATACAGTACTTGCATGCTGGTTGTTCTTTTGCGAGTTC AGTTAAACATAATCGGTGGATATATTTACCTGGATAATGCAGCAGTTGGCAAAAATGGCA CCACAGTTCTTGCTCCCCCAGATGTCCAACAGCAGTATTTGTCAAGTATCCAACACCTCC TTGGAGATGGCCTGACAGAATTGATCACTGTCATTAAACAATCTGTGCAGAAGATTTTAG GAAGTGTTTCTCTTAAACATTCTTTGTCTCTTTTGGACTTGGAGCAAAAACTAAAAGAAA TCAGAGATCTCGTTGAGCAGCATAAGTCTTCTTCTTGGATTAATAAAGATGGATCCAGAT CTTTATTGTGCCATTATATGATGCCAGATGAAGAAACTCCATTAGCAGTTCAGGCCTGTG GGCTTTCTCCTAGAGATGTTACCACTATTAAACTACTCAATGAAACTAGAGACATGTTGG AAAGTCCAGATTTTAGTACGGTTTTGAATATCTGTTTGAACCGAGGATTTAGCAGGCTGC TAGACAATATGGCTGAGTTCTTCCGACCTACTGAGCAGGACCTCCAACATGGTAACTCCA GGAATAGTCTTTCCAGTGTCAGCCTGCCTTTAGCTAAGATAATTCCAATAATAAATGGAC AGATCCATTCAGTTTGCAGTGAAACACCTAGTCATTTTGTTCAGGATCTGTTGATGATGG AGCAAGTGAAAGATTTTGCTGCCAATGTGTATGAGGCTTTTAGTACTCCTCAACAACTGG AGAAATGATTTTTTTTTCCTTCAAGAAAAACTACAGTGGAATTCATTTACTTTTAAAAAT ACACTGAATAGAGCAACTATATATAGGATAATGATTTGTTAACCAAAATGCCTAATAAAA ATATATTCTTAAAGCCTCCATTTCATAATAAAATAGATTTATTCGGTATCTTAATATATT TTTTTAAAGTCATCAACAGACTGGTTTTTGTGGGTATACCTGAGTGTACACAGTGCACAG GTTGGAATTGTTAATAGTTTGTTACCCATGGATATTAGTTCCAAATGGATTAAAAACTAA TATAGATACTTTTTTATATGAAATTCATTATACTGGGACATTAATACTGAGGTATTTCCT GGGAAGCAGGTATAAAGTTTGGAAAATACGGTCTTTAATCATAAAGTTCACGGGACTGCA GTTTAAGAAGTAAATTAGACTTTCCTCCAGTTAGTCGTCAAAGGGATAAATTATTTGTCT TAAATATACCTGATTAGGGATTTTTTTATGGAAATCATTGAATTTAATAACCATGATTGG CAATTTTTTTCTTTACCGTTGTTAACAATCCTTAGGAAACTACATTTTGATTTATAGGTG AAAATTATGTTGATGCTGTTTACTCACAGCTGTTACTAACTACTGTACATATGGTTTCTT TCATTTGTATGTAAATAATTTTAATAACTTACTTTGTATTGATTTTGAGCACAGTGAATC TTATTGCAATAAAATATTTTAGTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAGTCGCGTTTGTGATTTCTGGAGAACGCTGAGCGGGACGACGGCGGTCCAGCCGGG TCTTCCGGGCCAGGTGACGAAGAAACGGCTTCTTGGGGAGCCATCCCCCCTACCTTCCAG GCAGCCCGCAGCCCCAGGGCCTGAAGATGCTGAGATCTACGTGGAATTTTCTGAAACGTC ACAAAAAGAAATGCATCTTCCTGGGGACGGTCCTCGGAGGAATATATATCCTGGGGAAAT ATGGACAGAAGAAAATCAGAGAAATACAAGAAAGGGAGGCTGCAGAATACATTGCCCAAG CACGACGACAGTATCATTTTGAAAGTAACCAGAGGACTTGCAATATGACAGTGCTGTCCA TGCTTCCAACACTGAGAGAGGCCTTAATGCAGCAACTCAATTCTGAGAGCCTTACAGTTC TGCTAAAAAACAGGCCTTCAAACAAGCTAGAAATATGGGAGGATCTGAAGATAATAAGTT TCACAAGAAGTATCGTAGCTGTATACAGTACTTGCATGCTGGTTGTTCTTTTGCGAGTTC AGTTAAACATAATCGGTGGATATATTTACCTGGATAATGCAGCAGTTGGCAAAAATGGCA CCACAGTTCTTGCTCCCCCAGATGTCCAACAGCAGTATTTGTCAAGTATCCAACACCTCC TTGGAGATGGCCTGACAGAATTGATCACTGTCATTAAACAATCTGTGCAGAAGATTTTAG GAAGTGTTTCTCTTAAACATTCTTTGTCTCTTTTGGACTTGGAGCAAAAACTAAAAGAAA TCAGAGATCTCGTTGAGCAGCATAAGTCTTCTTCTTGGATTAATAAAGATGGATCCAGAT CTTTATTGTGCCATTATATGATGCCAGATGAAGAAACTCCATTAGCAGTTCAGGCCTGTG GGCTTTCTCCTAGAGATGTTACCACTATTAAACTACTCAATGAAACTAGAGACATGTTGG AAAGTCCAGATTTTAGTACGGTTTTGAATATCTGTTTGAACCGAGGATTTAGCAGGCTGC TAGACAATATGGCTGAGTTCTTCCGACCTACTGAGCAGGACCTCCAACATGGTAACTCCA GGAATAGTCTTTCCAGTGTCAGCCTGCCTTTAGCTAAGATAATTCCAATAATAAATGGAC AGATCCATTCAGTTTGCAGTGAAACACCTAGTCATTTTGTTCAGGATCTGTTGATGATGG AGCAAGTGAAAGATTTTGCTGCCAATGTGTATGAGGCTTTTAGTACTCCTCAACAACTGG AGAAATGATTTTTTTTTCCTTCAAGAAAAACTACAGTGGAATTCATTTACTTTTAAAAAT ACACTGAATAGAGCAACTATATATAGGATAATGATTTGTTAACCAAAATGCCTAATAAAA ATATATTCTTAAAGCCTCCATTTCATAATAAAATAGATTTATTCGGTATCTTAATATATT TTTTTAAAGTCATCAACAGACTGGTTTTTGTGGGTATACCTGAGTGTACACAGTGCACAG GTTGGAATTGTTAATAGTTTGTTACCCATGGATATTAGTTCCAAATGGATTAAAAACTAA TATAGATACTTTTTTATATGAAATTCATTATACTGGGACATTAATACTGAGGTATTTCCT GGGAAGCAGGTATAAAGTTTGGAAAATACGGTCTTTAATCATAAAGTTCACGGGACTGCA GTTTAAGAAGTAAATTAGACTTTCCTCCAGTTAGTCGTCAAAGGGATAAATTATTTGTCT TAAATATACCTGATTAGGGATTTTTTTATGGAAATCATTGAATTTAATAACCATGATTGG CAATTTTTTTCTTTACCGTTGTTAACAATCCTTAGGAAACTACATTTTGATTTATAGGTG AAAATTATGTTGATGCTGTTTACTCACAGCTGTTACTAACTACTGTACATATGGTTTCTT TCATTTGTATGTAAATAATTTTAATAACTTACTTTGTATTGATTTTGAGCACAGTGAATC TTATTGCAATAAAATATTTTAGTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 478-596, - strand, RNAz p=0.539385 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 478-596, - strand, RNAz p=0.539385 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-220, gnl|bosTau2|chr9 (48248838-48248619) | |
| 1-220, gnl|Hg17|chr6 (143813729-143813946) | |
| 1-220, gnl|Mm7|chr10 (13253393-13253182) | |
| 478-602, gnl|bosTau2|chr9 (48227672-48227548) | |
| 478-602, gnl|canFam2|chr1 (38056316-38056416) | |
| 478-602, gnl|danRer3|chr20 (44726055-44726155) | |
| 478-602, gnl|dasNov1|scaffold_30497 (4258-4357) | |
| 478-602, gnl|fr1|chrUn (285348018-285348118) | |
| 478-602, gnl|galGal2|chr3 (51393735-51393635) | |
| 478-602, gnl|hg17|chr6 (143833790-143833890) | |
| 478-602, gnl|Hg17|chr6 (143833791-143833915) | |
| 478-602, gnl|loxAfr1|scaffold_23713 (43947-44049) | |
| 478-602, gnl|mm7|chr10 (13236427-13236327) | |
| 478-602, gnl|Mm7|chr10 (13236424-13236300) | |
| 478-602, gnl|monDom2|scaffold_0 (64243312-64243212) | |
| 478-602, gnl|oryCun1|scaffold_106458 (5711-5811) | |
| 478-602, gnl|panTro1|chr5 (146748779-146748879) | |
| 478-602, gnl|rheMac2|chr4 (120218621-120218521) | |
| 478-602, gnl|rn3|chr1 (8339897-8339797) | |
| 478-602, gnl|tetNig1|chrUn_random (50357270-50357369) | |
| 478-602, gnl|xenTro1|scaffold_259 (578900-578800) | |
| 723-894, gnl|bosTau2|chr9 (48226502-48226331) | |
| 723-894, gnl|Hg17|chr6 (143834988-143835159) | |
| 723-894, gnl|Mm7|chr10 (13235196-13235028) | |
| 1172-1805, gnl|bosTau2|chr9 (48218052-48217436) | |
| 1172-1805, gnl|Hg17|chr6 (143851960-143852611) | |
| 1172-1805, gnl|Mm7|chr10 (13225338-13224749) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-220, gnl|bosTau2|chr9 (48248838-48248619) | |
| 1-220, gnl|Hg17|chr6 (143813729-143813946) | |
| 1-220, gnl|Mm7|chr10 (13253393-13253182) | |
| 478-602, gnl|bosTau2|chr9 (48227672-48227548) | |
| 478-602, gnl|canFam2|chr1 (38056316-38056416) | |
| 478-602, gnl|danRer3|chr20 (44726055-44726155) | |
| 478-602, gnl|dasNov1|scaffold_30497 (4258-4357) | |
| 478-602, gnl|fr1|chrUn (285348018-285348118) | |
| 478-602, gnl|galGal2|chr3 (51393735-51393635) | |
| 478-602, gnl|hg17|chr6 (143833790-143833890) | |
| 478-602, gnl|Hg17|chr6 (143833791-143833915) | |
| 478-602, gnl|loxAfr1|scaffold_23713 (43947-44049) | |
| 478-602, gnl|mm7|chr10 (13236427-13236327) | |
| 478-602, gnl|Mm7|chr10 (13236424-13236300) | |
| 478-602, gnl|monDom2|scaffold_0 (64243312-64243212) | |
| 478-602, gnl|oryCun1|scaffold_106458 (5711-5811) | |
| 478-602, gnl|panTro1|chr5 (146748779-146748879) | |
| 478-602, gnl|rheMac2|chr4 (120218621-120218521) | |
| 478-602, gnl|rn3|chr1 (8339897-8339797) | |
| 478-602, gnl|tetNig1|chrUn_random (50357270-50357369) | |
| 478-602, gnl|xenTro1|scaffold_259 (578900-578800) | |
| 723-894, gnl|bosTau2|chr9 (48226502-48226331) | |
| 723-894, gnl|Hg17|chr6 (143834988-143835159) | |
| 723-894, gnl|Mm7|chr10 (13235196-13235028) | |
| 1172-1805, gnl|bosTau2|chr9 (48218052-48217436) | |
| 1172-1805, gnl|Hg17|chr6 (143851960-143852611) | |
| 1172-1805, gnl|Mm7|chr10 (13225338-13224749) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| fat (0.737137) | |
| mgp (0.692042) | |
| ret (0.643666) | |
| liv (0.438853) | |
| kid (0.389206) | |
| mga (0.32041) | |
| lin (0.291206) | |
| tra (0.246184) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| sin (0.174948) | |
| fco (0.157208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.737137) | |
| mgp (0.692042) | |
| ret (0.643666) | |
| liv (0.438853) | |
| kid (0.389206) | |
| mga (0.32041) | |
| lin (0.291206) | |
| tra (0.246184) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| sin (0.174948) | |
| fco (0.157208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |