Non-Coding RNA Search

Ss1.1-rtra17_g16.5

Sequence:


               
               TGAAAACATCTGATAATTTACAATTCAGAATAACTAAGGGAATGAGGTAATTGTTTTTCT
AAAAACTTTTTCCTATAACTCACAGCATTGTACCATTTATTGGCGGTTTTGTAGTGTTTG
GGGGGGAAGACAGTAGAAATGTCATATTATTCAATAGACAATATCATGTTTGAACTTTTT
TAATGGATAATAGGGCATAACTGAGTGCTGCTATCTTGAAATGTGCACAGGTACACTTAA
TTTTTTTTAAGTTTTTCCCATTCAGGAAAACATTGTTGTGATCTATACTACAGGAACCAA
ATGTCATGCATCATACATATGTGTATAAAGTACATAAAATATATCTAAATATGCATAATG
GGGGGAGGGTAATATTGTCTGTGAAATAATGTAAGAAGCTTTTCACTTTAAAGAAAAAAT
GCATTACTTTCACTTAACATTAGACACCAGGTCAAAATTTTCAAGGTTGTTGTAGTACTC
TAATAAATTCCAACAGTTGATTCTTAGACATGCTAGCTAGTGTTGAAGCTGTTCTACTCT
ATTTATGCTGAATTTGATTATTTTAATGCCAAAAATTTTTTTTAGTTATAATCACTGGTG
ATAACTTGGAAATAAATAATTATGCAATGACAGCTGACAGTTCATTATCTCTAGGTAAAA
ATTCACTGGGTTTAGAGAATGGTGTTATTAGCTGATTATTAACAAATCAAATATTTATTT
GTTACATTATTTTGTATTTCAAATTTCCTTTTACATTCTTTTTTTATGCTTTCTGACATT
ACATATTTTTAAAGAGTATGGAAAAATAATTTAAAGATTTGAGGTCTGGTGGATGTTTAT
CTACTAAGTTTGAAAATGTAATATTTTGATAATACTGTACTAAAACTGTCACACAAATGC
TTTTCTAATGTTTTAACGTTGAGTATTGCAGTTGCTGCTTTGTACAGAGGTTACTGCAAT
AAAGGAAGTGGATTCATTAAACCTATTTAATATCTACTCTTATGTTTTATCTGTTTCATA
AATCTCTGTCAACTTTGTGATTTAGTCTTATTTATACATTTATTTCATGGTTGTCTGGGT
TTTTTAAATGGCTTTTAGCATAATCTTAATGCCTGGAAAAGTTGTTTGAAATTGTTCACT
ATTCAAGGCTTTCGTATAATCACTATTTATATTGACAGTGTGATTGAGCCATGTCAGATG
CAGCTCATTTTGATATTTTGTAAATGATTTAGCTTTTCTTATTCTGCTTTATCTTTGGCT
TAAATCATGTGTTTATGAATGAGGAAACTTGAAGATTAAAATCGATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAACATCTGATAATTTACAATTCAGAATAACTAAGGGAATGAGGTAATTGTTTTTCT
AAAAACTTTTTCCTATAACTCACAGCATTGTACCATTTATTGGCGGTTTTGTAGTGTTTG
GGGGGGAAGACAGTAGAAATGTCATATTATTCAATAGACAATATCATGTTTGAACTTTTT
TAATGGATAATAGGGCATAACTGAGTGCTGCTATCTTGAAATGTGCACAGGTACACTTAA
TTTTTTTTAAGTTTTTCCCATTCAGGAAAACATTGTTGTGATCTATACTACAGGAACCAA
ATGTCATGCATCATACATATGTGTATAAAGTACATAAAATATATCTAAATATGCATAATG
GGGGGAGGGTAATATTGTCTGTGAAATAATGTAAGAAGCTTTTCACTTTAAAGAAAAAAT
GCATTACTTTCACTTAACATTAGACACCAGGTCAAAATTTTCAAGGTTGTTGTAGTACTC
TAATAAATTCCAACAGTTGATTCTTAGACATGCTAGCTAGTGTTGAAGCTGTTCTACTCT
ATTTATGCTGAATTTGATTATTTTAATGCCAAAAATTTTTTTTAGTTATAATCACTGGTG
ATAACTTGGAAATAAATAATTATGCAATGACAGCTGACAGTTCATTATCTCTAGGTAAAA
ATTCACTGGGTTTAGAGAATGGTGTTATTAGCTGATTATTAACAAATCAAATATTTATTT
GTTACATTATTTTGTATTTCAAATTTCCTTTTACATTCTTTTTTTATGCTTTCTGACATT
ACATATTTTTAAAGAGTATGGAAAAATAATTTAAAGATTTGAGGTCTGGTGGATGTTTAT
CTACTAAGTTTGAAAATGTAATATTTTGATAATACTGTACTAAAACTGTCACACAAATGC
TTTTCTAATGTTTTAACGTTGAGTATTGCAGTTGCTGCTTTGTACAGAGGTTACTGCAAT
AAAGGAAGTGGATTCATTAAACCTATTTAATATCTACTCTTATGTTTTATCTGTTTCATA
AATCTCTGTCAACTTTGTGATTTAGTCTTATTTATACATTTATTTCATGGTTGTCTGGGT
TTTTTAAATGGCTTTTAGCATAATCTTAATGCCTGGAAAAGTTGTTTGAAATTGTTCACT
ATTCAAGGCTTTCGTATAATCACTATTTATATTGACAGTGTGATTGAGCCATGTCAGATG
CAGCTCATTTTGATATTTTGTAAATGATTTAGCTTTTCTTATTCTGCTTTATCTTTGGCT
TAAATCATGTGTTTATGAATGAGGAAACTTGAAGATTAAAATCGATTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               457-565, - strand, RNAz p=0.867279
               

               
               904-1023, - strand, RNAz p=0.75115

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-565, - strand, RNAz p=0.867279
               

               
               904-1023, - strand, RNAz p=0.75115

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               14-1308, gnl|bosTau2|chr6 (41989309-41987991)
               

               
               14-1308, gnl|Hg17|chr5 (127552273-127553583)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1308, gnl|bosTau2|chr6 (41989309-41987991)
               

               
               14-1308, gnl|Hg17|chr5 (127552273-127553583)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               pro (1.02407)
               

               
               sag (0.730861)
               

               
               lin (0.728014)
               

               
               ret (0.643666)
               

               
               tra (0.61546)
               

               
               fce (0.543183)
               

               
               pty (0.428143)
               

               
               fco (0.314416)
               

               
               eje (0.296501)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               sag (0.730861)
               

               
               lin (0.728014)
               

               
               ret (0.643666)
               

               
               tra (0.61546)
               

               
               fce (0.543183)
               

               
               pty (0.428143)
               

               
               fco (0.314416)
               

               
               eje (0.296501)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)

	457-565, - strand, RNAz p=0.867279
	904-1023, - strand, RNAz p=0.75115

	14-1308, gnl\|bosTau2\|chr6 (41989309-41987991)
	14-1308, gnl\|Hg17\|chr5 (127552273-127553583)

	pro (1.02407)
	sag (0.730861)
	lin (0.728014)
	ret (0.643666)
	tra (0.61546)
	fce (0.543183)
	pty (0.428143)
	fco (0.314416)
	eje (0.296501)
	tes (0.207814)
	mgm (0.180343)
	fbs (0.175346)
	sin (0.174948)
	tbr (0.154178)
	hyp (0.142837)
	nca (0.136874)
	lyg (0.133103)