Non-Coding RNA Search

Ss1.1-rtra17_i12.5

Sequence:


               
               TACTACTTAAACATGTTTGCTATAAAATATCATCACAAGTAAATGAGCGGGGTGTAAACA
ACTCTGCTTTGTGATGCATTAGGACATGTTTGAGCTACAGCAAATTAGTGCATTAGCAAT
GTCATAGCAAGTGCATGCACTAAGGGGGAAAAGAAACTCTGTCTCCAAATTTATCAGCAG
AAGTGGTCATCTTCTAGACGAATAATCTGGGGGACATTTTCTACATCTGAGTTACCTCAT
CAGTAAGTGCCATGTTTCCACCATGTCATAAGAAACTAATTTCCTGCAACAGTTGTGGAA
ATGATTAGAACAATAGCAAAATAGAGCAGTATACCTGTGCCAAAACCCATCAGTGCTCAA
AAGGAGAACTGTGTTAAGCACATTAAAGAAAGTTTACATCTGACATTGCTTTCTAGGAAT
TGCTTCTGCAGATTCCAGACACTACAGCTCACTCTTAACACCGTAAAAAGATCGTGAAGT
GGTTATTGGCAAGCGTTTGTAAATGTGACCATGTATAAAGCATTTATACTCCTAATTCAC
ACTGTTAGAGAACAAAATCATCTGAGTATTGCCACATGACAAGGTTAGTAAACAGGAATA
CTAGAACTACGTTTTGCATGATGCACAAGCACCAATTATGACTAATCCGTACACAGTTAA
CCTAATGCAAATAAATACTGGTTAAGTCGATGTATGGCACAGAATATAATTTGACTCTCA
AGACTTTTTGCATAATGAAAAAGTCTATATATATGTGTATATGAATTATGTGGGCATTCT
TGATACTTCAAGTTCTAGTTTCAAAACAAATACATAACTAATTTAATTTTACACAAAAAT
ATTTATGCAGATTTTCAGAATTTCATATCCAGAAATAACCTTTTTATGTCTGTTAAATAT
CGAAACAATTTGCTACAGTGTTAACCTGCATGGTCTTAAAGCCTGCTGTAGTTGTGTTGC
AGACAGTGCATGAAAAAGTCCCCCCTGGGAATGGAGCTGTGCCCCAAAGCCCAGAGGAGC
ACATGGAAACTGGGTTAGTCTAGAACTAATCAGATTACTGATTTAGGACACAGAATACCA
ACAGAATTGTTGTATATGCTTGTACAGATTGATTCTGTGTGTTCCTCTGAACAAAGCAGA
GAGAATTATGTTACCATCAAGATTGAAATGAAACTTCCAACTTCTCTAATAAAAAATGAA
AACACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTACTTAAACATGTTTGCTATAAAATATCATCACAAGTAAATGAGCGGGGTGTAAACA
ACTCTGCTTTGTGATGCATTAGGACATGTTTGAGCTACAGCAAATTAGTGCATTAGCAAT
GTCATAGCAAGTGCATGCACTAAGGGGGAAAAGAAACTCTGTCTCCAAATTTATCAGCAG
AAGTGGTCATCTTCTAGACGAATAATCTGGGGGACATTTTCTACATCTGAGTTACCTCAT
CAGTAAGTGCCATGTTTCCACCATGTCATAAGAAACTAATTTCCTGCAACAGTTGTGGAA
ATGATTAGAACAATAGCAAAATAGAGCAGTATACCTGTGCCAAAACCCATCAGTGCTCAA
AAGGAGAACTGTGTTAAGCACATTAAAGAAAGTTTACATCTGACATTGCTTTCTAGGAAT
TGCTTCTGCAGATTCCAGACACTACAGCTCACTCTTAACACCGTAAAAAGATCGTGAAGT
GGTTATTGGCAAGCGTTTGTAAATGTGACCATGTATAAAGCATTTATACTCCTAATTCAC
ACTGTTAGAGAACAAAATCATCTGAGTATTGCCACATGACAAGGTTAGTAAACAGGAATA
CTAGAACTACGTTTTGCATGATGCACAAGCACCAATTATGACTAATCCGTACACAGTTAA
CCTAATGCAAATAAATACTGGTTAAGTCGATGTATGGCACAGAATATAATTTGACTCTCA
AGACTTTTTGCATAATGAAAAAGTCTATATATATGTGTATATGAATTATGTGGGCATTCT
TGATACTTCAAGTTCTAGTTTCAAAACAAATACATAACTAATTTAATTTTACACAAAAAT
ATTTATGCAGATTTTCAGAATTTCATATCCAGAAATAACCTTTTTATGTCTGTTAAATAT
CGAAACAATTTGCTACAGTGTTAACCTGCATGGTCTTAAAGCCTGCTGTAGTTGTGTTGC
AGACAGTGCATGAAAAAGTCCCCCCTGGGAATGGAGCTGTGCCCCAAAGCCCAGAGGAGC
ACATGGAAACTGGGTTAGTCTAGAACTAATCAGATTACTGATTTAGGACACAGAATACCA
ACAGAATTGTTGTATATGCTTGTACAGATTGATTCTGTGTGTTCCTCTGAACAAAGCAGA
GAGAATTATGTTACCATCAAGATTGAAATGAAACTTCCAACTTCTCTAATAAAAAATGAA
AACACAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-252, + strand, RNAz p=0.989597

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-252, + strand, RNAz p=0.989597

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               6-94, + strand, RNAmicro p=0.934224

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               6-94, + strand, RNAmicro p=0.934224

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of L41349, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of L41349, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1206, gnl|bosTau2|chr13 (471932-473123)
               

               
               1-1206, gnl|Hg17|chr20 (9407904-9409119)
               

               
               1-1206, gnl|Mm7|chr2 (135754226-135755446)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1206, gnl|bosTau2|chr13 (471932-473123)
               

               
               1-1206, gnl|Hg17|chr20 (9407904-9409119)
               

               
               1-1206, gnl|Mm7|chr2 (135754226-135755446)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbe (0.717703)
               

               
               gul (0.710353)
               

               
               ret (0.514933)
               

               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               gul (0.710353)
               

               
               ret (0.514933)
               

               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	1-1206, gnl\|bosTau2\|chr13 (471932-473123)
	1-1206, gnl\|Hg17\|chr20 (9407904-9409119)
	1-1206, gnl\|Mm7\|chr2 (135754226-135755446)

	cbe (0.717703)
	gul (0.710353)
	ret (0.514933)
	tra (0.369276)
	liv (0.292569)
	lin (0.291206)
	fce (0.271592)
	lyg (0.266205)
	sug (0.254582)
	ece (0.229305)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	fco (0.157208)
	ski (0.146735)
	ova (0.129132)
	bla (0.124347)
	cty (0.10408)