Non-Coding RNA Search

Ss1.1-rtra17_k20.5

Sequence:


               
               CAGGGTGGATCAGTATTGTTTGGAAGTCGTTACCTTCGAGCTGTTGCGTTCAACTTTTGA
TTCGACATCGCCTTTATGTTTGATGCCCACTTGCTTTTTGGAGGTGGCGTTTTTAGGAAG
GGATGGAGGAGACAATAGAGAAAGCGATTAGAAACCAGCACTATAGCTGCTTGAGCTTTT
CTACGGCAACGGTCTGTTGCCGGGGTTTGGGTGTTCTGGGTTTGGGATTTTGTTGCGTTT
TCTTGTCCGATGACGTTCATGAACCAGTGGCATGCATTCTACTTTAATCGGTTTTGCATC
ATTTTCACTCGTTTAGATTATAAAAGCATGTGGTTTTTTATATATGACTTTCGCTGTTGA
TTACGAAGCACAATGTTCATAAATGTTGTGATGATCTATAAGGTCTTCTCTTAAAGAATG
TAAAGACATGTAGTTTGGGGAAGGTTATTTTGGAGAAATGGGACTCGGTCAGCAAACGCG
CCTATGTATTTGGTCCTCATTTTTCTCGGTCGTTTCTTTCATTCGCACCTTGCTAAGAGC
GTTCAGAGTGCCTCCCTCTGACCATCCTTCCTCCCATGCCAGCCACCGCCGCCTGCTCAG
CTGGGTTCCCGTGTCCAAGGTGACTCACTGACCTGGGCCTCCTTCCACCGTACTTCACAG
GAACCAAATGCCAAACGGAGGAAATAGTAAGTCCTCCCAATTTCTCCAAGATAAAGCTTT
TTTTAAAAAAAAAAATCACTGCTTATTAATATTAAATATAGGTCTCATTCATACAGTGTA
TGAGTAAGATCATTGGACAATGTCCACAAGGACCAATTTTTAAAACATGTTCTTGTGTTC
TGGCTGAATAGTAACGTCTTGTCCTTTATTTTCAATATTTGATAAACATTTGATGTTGAC
AACTTAGATGATAGATGCTTGTATATGAATGTGTTGTAATAAAGTGAGGTTTTCTTGATA
TATATTTATTAAAATGATCAAAATTCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGTGGATCAGTATTGTTTGGAAGTCGTTACCTTCGAGCTGTTGCGTTCAACTTTTGA
TTCGACATCGCCTTTATGTTTGATGCCCACTTGCTTTTTGGAGGTGGCGTTTTTAGGAAG
GGATGGAGGAGACAATAGAGAAAGCGATTAGAAACCAGCACTATAGCTGCTTGAGCTTTT
CTACGGCAACGGTCTGTTGCCGGGGTTTGGGTGTTCTGGGTTTGGGATTTTGTTGCGTTT
TCTTGTCCGATGACGTTCATGAACCAGTGGCATGCATTCTACTTTAATCGGTTTTGCATC
ATTTTCACTCGTTTAGATTATAAAAGCATGTGGTTTTTTATATATGACTTTCGCTGTTGA
TTACGAAGCACAATGTTCATAAATGTTGTGATGATCTATAAGGTCTTCTCTTAAAGAATG
TAAAGACATGTAGTTTGGGGAAGGTTATTTTGGAGAAATGGGACTCGGTCAGCAAACGCG
CCTATGTATTTGGTCCTCATTTTTCTCGGTCGTTTCTTTCATTCGCACCTTGCTAAGAGC
GTTCAGAGTGCCTCCCTCTGACCATCCTTCCTCCCATGCCAGCCACCGCCGCCTGCTCAG
CTGGGTTCCCGTGTCCAAGGTGACTCACTGACCTGGGCCTCCTTCCACCGTACTTCACAG
GAACCAAATGCCAAACGGAGGAAATAGTAAGTCCTCCCAATTTCTCCAAGATAAAGCTTT
TTTTAAAAAAAAAAATCACTGCTTATTAATATTAAATATAGGTCTCATTCATACAGTGTA
TGAGTAAGATCATTGGACAATGTCCACAAGGACCAATTTTTAAAACATGTTCTTGTGTTC
TGGCTGAATAGTAACGTCTTGTCCTTTATTTTCAATATTTGATAAACATTTGATGTTGAC
AACTTAGATGATAGATGCTTGTATATGAATGTGTTGTAATAAAGTGAGGTTTTCTTGATA
TATATTTATTAAAATGATCAAAATTCAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               701-852, + strand, RNAz p=0.965681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               701-852, + strand, RNAz p=0.965681

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-987, gnl|bosTau2|chr13 (21467113-21466131)
               

               
               1-987, gnl|Hg17|chr1 (206804859-206805840)
               

               
               1-987, gnl|Mm7|chr1 (192398070-192397107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-987, gnl|bosTau2|chr13 (21467113-21466131)
               

               
               1-987, gnl|Hg17|chr1 (206804859-206805840)
               

               
               1-987, gnl|Mm7|chr1 (192398070-192397107)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cmu (0.372787)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-987, gnl\|bosTau2\|chr13 (21467113-21466131)
	1-987, gnl\|Hg17\|chr1 (206804859-206805840)
	1-987, gnl\|Mm7\|chr1 (192398070-192397107)

	cmu (0.372787)
	sag (0.182715)
	eye (0.170503)
	mga (0.160205)
	csk (0.140746)
	nca (0.136874)
	tra (0.123092)
	eep (0.122564)
	spc (0.113366)
	eje (0.0988338)