Ss1.1-rtra17_o4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAGTCCACAGGAGGCACTCGCTGCACTGAGGGAGCCACCTGCCCGAACTGTGAAGGGC CCAACTAGGACTTCTAAACAAACTGAAATATCACAGGGCGCCTGCATCGTTGACGTGCTC GTCATCATCACAGCAAAGAAGAAGGTCTGTCCACAAAAACAGTCTCCCTTCCGTCTAATG GCCCAGCACCCTCCAACCCGCCCAGAAACCCCGGGTCTGGAGAGATGGACCGCTACAGAG GAGGGTCTAGCACTCGCCCTCCCAGCCTTAGGGTGTCAGGGTGCAAGGTAACAAGGAGAA ACGAGAGGTGGAAGCAGAGGCCCAGGCAGCCGAGGGGAAGGGGCTCATGCGACCCCTCGA GGCGCTGCAGCAGGTAGGGCGGGTTGCCTAGGGACCGCTCGGCCCTCAGCTCCAGGGCAA CCCGAGGAGGAAAGCTCCCGACGCCGGGAACCTAGCCGTCGGACTGAGCGTCTGCGCCGC GAGTTATACAGCCGAAGAGTGCGTCGCTGTCCGCCCCGCGTCTCGGGGGCGGGGCCTCAG CCAAGCTCCGCCTCCTGCCTCTCCCCCCAGGAGCGCGAGCCGGTCCCGCGCAGCGCCAAG CCTTTCCCGGGTCATCGCCCCTCCCCTCTTCCGGGCCGCGAGCCCCCCGCGCGCCGCTTC AGAACCGCGCTCGTTCGCTCGCGCGCGCCCGCCCTCACTGCGCGCGCTCCGCCGCCCGAC GACGCGGGAGCAGCACGCGCCGGACTAGGCTCGCTGCGCTCCCTGTCGCCCTGCGCCTGC CGGCTAAGGCGGCGTCCTCGATTCTCGGTCCGGAGACGGTCAGGCAGCCAAATCTGTAGT CCGAGAGCGGCGGCGGCGGCGGCAGCAGCATTGAGAAATATGAAGAACGAAATTGCTGCT GTAGTCTTCTTTTTCACAAGGCTAGTTCGAAAACATGATAAGTTGAAAAAAGAAGCAGTT GAAAGGTTTGCTGAGAAATTGACTCTAATACTTCAAGAAAAATATAAAAATCACTGGTAT CCGGAAAAACCATCAAAAGGACAGGCCTACAGATGCATTCGGGTCAATAAGTTTCAGAGA GTTGATCCTGATGTCCTGAAAGCCTGTGAGAACAGCTGCATCTTATACAGTGATCTGGGC TTGCCAAAGGAACTTACTCTGTGGGTGGACCCCTGTGAGGTGTGCTGTCGGTATGGAGAG AAAAACAATGCATTCATCGTTGCCAGCTTTGAAAATGAGGAGGAGAATAAGGATGAAATT TCCAAGAAAGTTACCAGGGCCCTTGATAAGGTTACCTCTGATTATCATTCAGGATCCTCT TCTTCAGATGAAGAAACAAGTAAGGAAGTAGAAGTGAAACCCAATTCGGTGACTGCGACC CCTAGCCCTGTGTACCAGATTTCAGAACTGATATTCCCACCTCTTCCAATGTGGCACCCT TTGCCCAGAAAAAAGTCAGGAATGTACCGAGGAAATGGTCATCAAAATCACTACCCTCCT CCTGTTCCATTTGGTTATCCAAATCAGGGAAGGAAGAATAAACCATATCGCCCAATTCCA GTAACATGGGTACCTCCTCCTGGAATGCATTGTGACCGGAATCACTGGATTAATCCTCAC ATGTTAGCACCCCACTAGCTGCTTTTGATTCTGTTGGTGTCATGTTGAGAGAAGGTAGAA TAAGCCTGACATATTAAAAAGTTCTTACTCAAAGTAGTAAAGTTAGATGGGCCAAACCAT CAAACTTATTTTTATAGAGAAGTTATTGAAAATAATCTTTCCTAAAAGATATATATGCAC TTTAGATATATTGATATAGTTTGAGAAACTTTATTAAAGTTAGTCAAGTGCCTGAGTTTT TAATATTGGACTTGAGTATTTATATATTGTGCATCAACTCTGTTGGATATGAGAACACTG TAGGAGTGGGCAATATGTTCTAGCACCTTTGAGCATTTACTCTATGGAGAGTATGTAAGT TATTTATACACAAGGAAATCTATTTTATGTCATTGTTTAGAATTGCGTGAAATCATGTAG TTGCAAATAAAAAGTAGTTTGAGGCAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAGTCCACAGGAGGCACTCGCTGCACTGAGGGAGCCACCTGCCCGAACTGTGAAGGGC CCAACTAGGACTTCTAAACAAACTGAAATATCACAGGGCGCCTGCATCGTTGACGTGCTC GTCATCATCACAGCAAAGAAGAAGGTCTGTCCACAAAAACAGTCTCCCTTCCGTCTAATG GCCCAGCACCCTCCAACCCGCCCAGAAACCCCGGGTCTGGAGAGATGGACCGCTACAGAG GAGGGTCTAGCACTCGCCCTCCCAGCCTTAGGGTGTCAGGGTGCAAGGTAACAAGGAGAA ACGAGAGGTGGAAGCAGAGGCCCAGGCAGCCGAGGGGAAGGGGCTCATGCGACCCCTCGA GGCGCTGCAGCAGGTAGGGCGGGTTGCCTAGGGACCGCTCGGCCCTCAGCTCCAGGGCAA CCCGAGGAGGAAAGCTCCCGACGCCGGGAACCTAGCCGTCGGACTGAGCGTCTGCGCCGC GAGTTATACAGCCGAAGAGTGCGTCGCTGTCCGCCCCGCGTCTCGGGGGCGGGGCCTCAG CCAAGCTCCGCCTCCTGCCTCTCCCCCCAGGAGCGCGAGCCGGTCCCGCGCAGCGCCAAG CCTTTCCCGGGTCATCGCCCCTCCCCTCTTCCGGGCCGCGAGCCCCCCGCGCGCCGCTTC AGAACCGCGCTCGTTCGCTCGCGCGCGCCCGCCCTCACTGCGCGCGCTCCGCCGCCCGAC GACGCGGGAGCAGCACGCGCCGGACTAGGCTCGCTGCGCTCCCTGTCGCCCTGCGCCTGC CGGCTAAGGCGGCGTCCTCGATTCTCGGTCCGGAGACGGTCAGGCAGCCAAATCTGTAGT CCGAGAGCGGCGGCGGCGGCGGCAGCAGCATTGAGAAATATGAAGAACGAAATTGCTGCT GTAGTCTTCTTTTTCACAAGGCTAGTTCGAAAACATGATAAGTTGAAAAAAGAAGCAGTT GAAAGGTTTGCTGAGAAATTGACTCTAATACTTCAAGAAAAATATAAAAATCACTGGTAT CCGGAAAAACCATCAAAAGGACAGGCCTACAGATGCATTCGGGTCAATAAGTTTCAGAGA GTTGATCCTGATGTCCTGAAAGCCTGTGAGAACAGCTGCATCTTATACAGTGATCTGGGC TTGCCAAAGGAACTTACTCTGTGGGTGGACCCCTGTGAGGTGTGCTGTCGGTATGGAGAG AAAAACAATGCATTCATCGTTGCCAGCTTTGAAAATGAGGAGGAGAATAAGGATGAAATT TCCAAGAAAGTTACCAGGGCCCTTGATAAGGTTACCTCTGATTATCATTCAGGATCCTCT TCTTCAGATGAAGAAACAAGTAAGGAAGTAGAAGTGAAACCCAATTCGGTGACTGCGACC CCTAGCCCTGTGTACCAGATTTCAGAACTGATATTCCCACCTCTTCCAATGTGGCACCCT TTGCCCAGAAAAAAGTCAGGAATGTACCGAGGAAATGGTCATCAAAATCACTACCCTCCT CCTGTTCCATTTGGTTATCCAAATCAGGGAAGGAAGAATAAACCATATCGCCCAATTCCA GTAACATGGGTACCTCCTCCTGGAATGCATTGTGACCGGAATCACTGGATTAATCCTCAC ATGTTAGCACCCCACTAGCTGCTTTTGATTCTGTTGGTGTCATGTTGAGAGAAGGTAGAA TAAGCCTGACATATTAAAAAGTTCTTACTCAAAGTAGTAAAGTTAGATGGGCCAAACCAT CAAACTTATTTTTATAGAGAAGTTATTGAAAATAATCTTTCCTAAAAGATATATATGCAC TTTAGATATATTGATATAGTTTGAGAAACTTTATTAAAGTTAGTCAAGTGCCTGAGTTTT TAATATTGGACTTGAGTATTTATATATTGTGCATCAACTCTGTTGGATATGAGAACACTG TAGGAGTGGGCAATATGTTCTAGCACCTTTGAGCATTTACTCTATGGAGAGTATGTAAGT TATTTATACACAAGGAAATCTATTTTATGTCATTGTTTAGAATTGCGTGAAATCATGTAG TTGCAAATAAAAAGTAGTTTGAGGCAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 873-989, + strand, RNAz p=0.511862 | |
| 1673-1782, + strand, RNAz p=0.895856 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 873-989, + strand, RNAz p=0.511862 | |
| 1673-1782, + strand, RNAz p=0.895856 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR607894, + |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 5-862, gnl|bosTau2|chr1 (10985800-10986693) | |
| 5-862, gnl|Hg17|chr21 (17907731-17906887) | |
| 873-1052, gnl|bosTau2|chr1 (10990052-10990230) | |
| 873-1052, gnl|canFam2|chr31 (17104458-17104636) | |
| 873-1052, gnl|danRer3|chr5 (64841981-64841805) | |
| 873-1052, gnl|dasNov1|scaffold_12711 (49414-49592) | |
| 873-1052, gnl|echTel1|scaffold_311370 (57393-57214) | |
| 873-1052, gnl|fr1|chrUn (151847995-151848190) | |
| 873-1052, gnl|hg17|chr21 (17903155-17903334) | |
| 873-1052, gnl|Hg17|chr21 (17903341-17903161) | |
| 873-1052, gnl|loxAfr1|scaffold_9645 (53843-53665) | |
| 873-1052, gnl|mm7|chr16 (78370394-78370572) | |
| 873-1052, gnl|Mm7|chr16 (78370578-78370400) | |
| 873-1052, gnl|oryCun1|scaffold_90512 (6342-6520) | |
| 873-1052, gnl|panTro1|chr22 (18016296-18016475) | |
| 873-1052, gnl|rheMac2|chr3 (29324942-29324761) | |
| 873-1052, gnl|rn3|chr11 (17254298-17254476) | |
| 873-1052, gnl|tetNig1|chr7 (11065040-11065216) | |
| 873-1052, gnl|xenTro1|scaffold_116 (1066066-1066240) | |
| 1396-2066, gnl|bosTau2|chr1 (11004791-11005456) | |
| 1396-2066, gnl|canFam2|chr31 (17088518-17089042) | |
| 1396-2066, gnl|canFam2|chr31 (17088602-17089042) | |
| 1396-2066, gnl|dasNov1|scaffold_49483 (10577-11094) | |
| 1396-2066, gnl|dasNov1|scaffold_49483 (10645-11094) | |
| 1396-2066, gnl|echTel1|scaffold_262712 (2988-2470) | |
| 1396-2066, gnl|echTel1|scaffold_262712 (2905-2476) | |
| 1396-2066, gnl|hg17|chr21 (17887762-17888281) | |
| 1396-2066, gnl|Hg17|chr21 (17888524-17887845) | |
| 1396-2066, gnl|hg17|chr6 (139638835-139639267) | |
| 1396-2066, gnl|mm7|chr16 (78356956-78357453) | |
| 1396-2066, gnl|Mm7|chr16 (78357696-78357021) | |
| 1396-2066, gnl|mm7|chr17 (48847844-48847407) | |
| 1396-2066, gnl|oryCun1|scaffold_166590 (894-384) | |
| 1396-2066, gnl|oryCun1|scaffold_166590 (817-384) | |
| 1396-2066, gnl|panTro1|chr22 (18000892-18001415) | |
| 1396-2066, gnl|panTro1|chr5_random (9426194-9425768) | |
| 1396-2066, gnl|rheMac2|chr3 (29340961-29340434) | |
| 1396-2066, gnl|rheMac2|chr4 (124556851-124556412) | |
| 1396-2066, gnl|rn3|chr11 (17241565-17242056) | |
| 1396-2066, gnl|rn3|chr11 (17241627-17242056) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-862, gnl|bosTau2|chr1 (10985800-10986693) | |
| 5-862, gnl|Hg17|chr21 (17907731-17906887) | |
| 873-1052, gnl|bosTau2|chr1 (10990052-10990230) | |
| 873-1052, gnl|canFam2|chr31 (17104458-17104636) | |
| 873-1052, gnl|danRer3|chr5 (64841981-64841805) | |
| 873-1052, gnl|dasNov1|scaffold_12711 (49414-49592) | |
| 873-1052, gnl|echTel1|scaffold_311370 (57393-57214) | |
| 873-1052, gnl|fr1|chrUn (151847995-151848190) | |
| 873-1052, gnl|hg17|chr21 (17903155-17903334) | |
| 873-1052, gnl|Hg17|chr21 (17903341-17903161) | |
| 873-1052, gnl|loxAfr1|scaffold_9645 (53843-53665) | |
| 873-1052, gnl|mm7|chr16 (78370394-78370572) | |
| 873-1052, gnl|Mm7|chr16 (78370578-78370400) | |
| 873-1052, gnl|oryCun1|scaffold_90512 (6342-6520) | |
| 873-1052, gnl|panTro1|chr22 (18016296-18016475) | |
| 873-1052, gnl|rheMac2|chr3 (29324942-29324761) | |
| 873-1052, gnl|rn3|chr11 (17254298-17254476) | |
| 873-1052, gnl|tetNig1|chr7 (11065040-11065216) | |
| 873-1052, gnl|xenTro1|scaffold_116 (1066066-1066240) | |
| 1396-2066, gnl|bosTau2|chr1 (11004791-11005456) | |
| 1396-2066, gnl|canFam2|chr31 (17088518-17089042) | |
| 1396-2066, gnl|canFam2|chr31 (17088602-17089042) | |
| 1396-2066, gnl|dasNov1|scaffold_49483 (10577-11094) | |
| 1396-2066, gnl|dasNov1|scaffold_49483 (10645-11094) | |
| 1396-2066, gnl|echTel1|scaffold_262712 (2988-2470) | |
| 1396-2066, gnl|echTel1|scaffold_262712 (2905-2476) | |
| 1396-2066, gnl|hg17|chr21 (17887762-17888281) | |
| 1396-2066, gnl|Hg17|chr21 (17888524-17887845) | |
| 1396-2066, gnl|hg17|chr6 (139638835-139639267) | |
| 1396-2066, gnl|mm7|chr16 (78356956-78357453) | |
| 1396-2066, gnl|Mm7|chr16 (78357696-78357021) | |
| 1396-2066, gnl|mm7|chr17 (48847844-48847407) | |
| 1396-2066, gnl|oryCun1|scaffold_166590 (894-384) | |
| 1396-2066, gnl|oryCun1|scaffold_166590 (817-384) | |
| 1396-2066, gnl|panTro1|chr22 (18000892-18001415) | |
| 1396-2066, gnl|panTro1|chr5_random (9426194-9425768) | |
| 1396-2066, gnl|rheMac2|chr3 (29340961-29340434) | |
| 1396-2066, gnl|rheMac2|chr4 (124556851-124556412) | |
| 1396-2066, gnl|rn3|chr11 (17241565-17242056) | |
| 1396-2066, gnl|rn3|chr11 (17241627-17242056) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| mgp (1.84544) | |
| lun (1.05342) | |
| mgm (0.721371) | |
| rec (0.346141) | |
| mcp (0.341297) | |
| mga (0.32041) | |
| ski (0.29347) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| nje (0.16592) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (1.84544) | |
| lun (1.05342) | |
| mgm (0.721371) | |
| rec (0.346141) | |
| mcp (0.341297) | |
| mga (0.32041) | |
| ski (0.29347) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| nje (0.16592) | |
| fat (0.147427) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| jca (0.11396) |