Non-Coding RNA Search

Ss1.1-rtra18_d3.5

Sequence:


               
               CCCCCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGAGTGTTCCTGTTTATT
GAGGACACGGGGTCTACAGGTGCCTGTGGAGAAGGCCTGCCATCAGCCTGCCCCCAAAAG
GACGTACTCTCAAGCCTCCCAATGAAGCCCTGCCCTGAGGCCATCAAAGAGGTCTTCCAA
AACAAGTTCCACATCATTGGCGCCGTGGGCATTGGGATCGCCGTGGTGATGGTGAGTGTC
GGGGGTTTCGGAAGCGAATAGTCCTTCTGGTAGGTAAGATGTATTGAGCGCTTGCTCTGG
CCAGGCACTGGTGTTTTTTTGCTTTTGTTTTGGGGG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------GCACTGTTTTAA
CAAATCAGCTAATGTGTCAGCCTATGAAGGGGGAACCATTGGTATTCCCATTTTACAGAC
TTCTGGGCTGGAGAGACAGAGAGGGTTGAGTACGTTGATTCAAGGCTCTGAGGCCATGAG
TGAGGCATCTGGGACTTGAGGTCTGCGTCTCCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGAGTGTTCCTGTTTATT
GAGGACACGGGGTCTACAGGTGCCTGTGGAGAAGGCCTGCCATCAGCCTGCCCCCAAAAG
GACGTACTCTCAAGCCTCCCAATGAAGCCCTGCCCTGAGGCCATCAAAGAGGTCTTCCAA
AACAAGTTCCACATCATTGGCGCCGTGGGCATTGGGATCGCCGTGGTGATGGTGAGTGTC
GGGGGTTTCGGAAGCGAATAGTCCTTCTGGTAGGTAAGATGTATTGAGCGCTTGCTCTGG
CCAGGCACTGGTGTTTTTTTGCTTTTGTTTTGGGGG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------GCACTGTTTTAA
CAAATCAGCTAATGTGTCAGCCTATGAAGGGGGAACCATTGGTATTCCCATTTTACAGAC
TTCTGGGCTGGAGAGACAGAGAGGGTTGAGTACGTTGATTCAAGGCTCTGAGGCCATGAG
TGAGGCATCTGGGACTTGAGGTCTGCGTCTCCAGAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               145-504, gnl|bosTau2|chr5 (60933593-60933255)
               

               
               145-504, gnl|Hg17|chr12 (6215616-6215935)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-504, gnl|bosTau2|chr5 (60933593-60933255)
               

               
               145-504, gnl|Hg17|chr12 (6215616-6215935)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               pty (0.142714)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               tra (0.123092)

	145-504, gnl\|bosTau2\|chr5 (60933593-60933255)
	145-504, gnl\|Hg17\|chr12 (6215616-6215935)