Non-Coding RNA Search

Ss1.1-rtra19_b15.5

Sequence:


               
               ATTATGACAAACCAGGAATTAATTCTACAATGGAAAACTATCCATTCTGAATTATCTGGA
TATAATTATTTGCTTCTGCTGTGCTCTGTGTAAATTCTGAGTATCAAATTTCTACTTGGC
CTACTGAAGGTATCTTGTAGAGTTTTTTTGGGGAGGAGGAAAACTGGAAAATTCACTTTA
AATTGTATTTTTGCCAGAAGACTCTTACTTGCACGTATGTCAGGATCTTCAGTTTCTCTA
GAAGTCTCTATATCCAAAGTTCAGAATTCATGCGGAATACTCCTATGGGGTTAAACCCCT
TCACTACCAGCATTTATGGGGTTGGAAATCAATAGCAAGATGCTGTTCAAAACTTATGAT
GGGGTTTTTCTATTTTATACTTAGTTTTCTGGCAGTTGAAATTCCTATTTTTTTCTCTCA
AGTTGGCCTCAAATTTGCTCTTAAGCCAAATTACCTATAAATATTTTGGATAGGTTCTGT
TTGAAATAACAGTTTGTTAAAAGAGATGACAGAAAATGAAAATGCTCAAACTAAGCCAAG
ATTTTTAAGTGCCATAGCAGTCTTGCAAGATTCACTTTATATTTTAAATGATCGTTATTA
TCCTTTTGGTGGTAACGATCCACCACATACAACCATTATGAGGAATTGGATGTTCCATTT
TTCTCGTACCAAAAAGATAAAACGAATGGTAAACATGATTGTGGTATTTTGCATTGCCAA
GGCAGGCATATTCTAAAGAATTCACTGCTAATTCAACAGCACTGGCTTTCTCACTTCTGT
CAATCATATGAAACCTTGTTCATTTCTACCCAATACTGTAATGTTGATACTTGTACAATC
TCCCCTGTCATGACTTTAAGTTCTACTTTTCATTAACCGTTACCTGATATTAGTTCGTAG
AGCTTCTTATGGCAAAAATAAAATGTTTTTAATTCTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATGACAAACCAGGAATTAATTCTACAATGGAAAACTATCCATTCTGAATTATCTGGA
TATAATTATTTGCTTCTGCTGTGCTCTGTGTAAATTCTGAGTATCAAATTTCTACTTGGC
CTACTGAAGGTATCTTGTAGAGTTTTTTTGGGGAGGAGGAAAACTGGAAAATTCACTTTA
AATTGTATTTTTGCCAGAAGACTCTTACTTGCACGTATGTCAGGATCTTCAGTTTCTCTA
GAAGTCTCTATATCCAAAGTTCAGAATTCATGCGGAATACTCCTATGGGGTTAAACCCCT
TCACTACCAGCATTTATGGGGTTGGAAATCAATAGCAAGATGCTGTTCAAAACTTATGAT
GGGGTTTTTCTATTTTATACTTAGTTTTCTGGCAGTTGAAATTCCTATTTTTTTCTCTCA
AGTTGGCCTCAAATTTGCTCTTAAGCCAAATTACCTATAAATATTTTGGATAGGTTCTGT
TTGAAATAACAGTTTGTTAAAAGAGATGACAGAAAATGAAAATGCTCAAACTAAGCCAAG
ATTTTTAAGTGCCATAGCAGTCTTGCAAGATTCACTTTATATTTTAAATGATCGTTATTA
TCCTTTTGGTGGTAACGATCCACCACATACAACCATTATGAGGAATTGGATGTTCCATTT
TTCTCGTACCAAAAAGATAAAACGAATGGTAAACATGATTGTGGTATTTTGCATTGCCAA
GGCAGGCATATTCTAAAGAATTCACTGCTAATTCAACAGCACTGGCTTTCTCACTTCTGT
CAATCATATGAAACCTTGTTCATTTCTACCCAATACTGTAATGTTGATACTTGTACAATC
TCCCCTGTCATGACTTTAAGTTCTACTTTTCATTAACCGTTACCTGATATTAGTTCGTAG
AGCTTCTTATGGCAAAAATAAAATGTTTTTAATTCTGAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-938, gnl|bosTau2|chrX (1626505-1627418)
               

               
               1-938, gnl|Hg17|chrX (119173209-119174135)
               

               
               1-938, gnl|Mm7|chrX (33288428-33289298)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-938, gnl|bosTau2|chrX (1626505-1627418)
               

               
               1-938, gnl|Hg17|chrX (119173209-119174135)
               

               
               1-938, gnl|Mm7|chrX (33288428-33289298)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	1-938, gnl\|bosTau2\|chrX (1626505-1627418)
	1-938, gnl\|Hg17\|chrX (119173209-119174135)
	1-938, gnl\|Mm7\|chrX (33288428-33289298)

	pro (0.512033)
	vin (0.332557)
	fce (0.271592)
	kid (0.259471)
	sug (0.254582)
	mgp (0.230681)
	fcc (0.197785)
	sag (0.182715)
	fbs (0.175346)
	bfe (0.149858)
	liv (0.146284)
	hyp (0.142837)
	ret (0.128733)
	tra (0.123092)
	ecc (0.115035)