Non-Coding RNA Search

Ss1.1-rtra20_e19.5

Sequence:


               
               GATATAAAAAATGTTAAGTACTGAAAAGAGACTGGTTTTTAAATTAATAAAGACTGAAAA
AGATGGGCTGAATGAGAAGATAACTTAGCGAGTCTTCTACATGCCAAATTAATGGCCTCA
TAATTATTCAGACCACAGTCTGTATTAAAGACGTCTTGACTTTTGAGGCTAGGATTCAGT
CTCCCACCAGTGCTGTAACATACAAACCTAAAATTTGCCTGTTTCTAAGAAATCTTTATA
TTTTTACAAAATAATTTTATTCATAATTTCTATCATCTAATTATTCAGTAGGCATTATTT
TTAATAATTAACAACAATTTTTTTTTCTCTTTGAAACCTCAGAGGAGACAATCACATTCA
TAAACATTCCCAATATTCGGACTCTAGAGGAAATGCAGTTCACTAAAATTATCATGGCAC
TAAGAATTTACTTTTACCAAACTGTGTTATAACACTGAATTTCTGGTCAGAAGATATTCT
GTTTTAAAAATAACTTGTTTTGATGCTAACAGTATAACTGATAAGTAAAATTACTTTTCT
ATAATTTTTATGTTTAGAATTCATATTCACAATCAATATATTCAATCAATAGCTATATTT
CATTCCCAGCTGTCAAAAGTCCTGGGCCACTTTTGAATACTTAAAGCATTCCAATTATCT
TTCTAGCCAAAATGGTGCTGAATTATTTCAACTTGAATGTACAATGTGTTAAGTCTTAGC
TCAGAGGATATAAACATTTAATATATAACTGCTTACTATGAACTAAGTAACATGTGATTT
GGTATTGTAATGTTTTTAATGAAGTTTTACTTTCTCCCAAAATTTTCAGGAATTCTAGTT
GTAAAACATTTTTAACTTTTTTGAAGAGCTCTTATTTTATATGCCCAGACACTGGCTTTA
TATTCTTCTTTACACTCTCACATTCTTTTATTATATGCCTATACTATGATTGCAAGATTA
TGTAAAAATGCCTTGAATAAACGATTTCAAGTGTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATAAAAAATGTTAAGTACTGAAAAGAGACTGGTTTTTAAATTAATAAAGACTGAAAA
AGATGGGCTGAATGAGAAGATAACTTAGCGAGTCTTCTACATGCCAAATTAATGGCCTCA
TAATTATTCAGACCACAGTCTGTATTAAAGACGTCTTGACTTTTGAGGCTAGGATTCAGT
CTCCCACCAGTGCTGTAACATACAAACCTAAAATTTGCCTGTTTCTAAGAAATCTTTATA
TTTTTACAAAATAATTTTATTCATAATTTCTATCATCTAATTATTCAGTAGGCATTATTT
TTAATAATTAACAACAATTTTTTTTTCTCTTTGAAACCTCAGAGGAGACAATCACATTCA
TAAACATTCCCAATATTCGGACTCTAGAGGAAATGCAGTTCACTAAAATTATCATGGCAC
TAAGAATTTACTTTTACCAAACTGTGTTATAACACTGAATTTCTGGTCAGAAGATATTCT
GTTTTAAAAATAACTTGTTTTGATGCTAACAGTATAACTGATAAGTAAAATTACTTTTCT
ATAATTTTTATGTTTAGAATTCATATTCACAATCAATATATTCAATCAATAGCTATATTT
CATTCCCAGCTGTCAAAAGTCCTGGGCCACTTTTGAATACTTAAAGCATTCCAATTATCT
TTCTAGCCAAAATGGTGCTGAATTATTTCAACTTGAATGTACAATGTGTTAAGTCTTAGC
TCAGAGGATATAAACATTTAATATATAACTGCTTACTATGAACTAAGTAACATGTGATTT
GGTATTGTAATGTTTTTAATGAAGTTTTACTTTCTCCCAAAATTTTCAGGAATTCTAGTT
GTAAAACATTTTTAACTTTTTTGAAGAGCTCTTATTTTATATGCCCAGACACTGGCTTTA
TATTCTTCTTTACACTCTCACATTCTTTTATTATATGCCTATACTATGATTGCAAGATTA
TGTAAAAATGCCTTGAATAAACGATTTCAAGTGTCAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-149, - strand, RNAz p=0.784728

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-149, - strand, RNAz p=0.784728

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-186, gnl|bosTau2|chr7 (24619507-24619333)
               

               
               1-186, gnl|Hg17|chr5 (121427767-121427569)
               


               
               215-543, gnl|bosTau2|chr7 (24619328-24619013)
               

               
               215-543, gnl|Hg17|chr5 (121427564-121427243)
               

               
               215-543, gnl|Mm7|chr18 (52894657-52894381)
               


               
               573-995, gnl|bosTau2|chr7 (24619018-24618594)
               

               
               573-995, gnl|Hg17|chr5 (121427248-121426789)
               

               
               573-995, gnl|Mm7|chr18 (52894386-52893947)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr7 (24619507-24619333)
               

               
               1-186, gnl|Hg17|chr5 (121427767-121427569)
               


               
               215-543, gnl|bosTau2|chr7 (24619328-24619013)
               

               
               215-543, gnl|Hg17|chr5 (121427564-121427243)
               

               
               215-543, gnl|Mm7|chr18 (52894657-52894381)
               


               
               573-995, gnl|bosTau2|chr7 (24619018-24618594)
               

               
               573-995, gnl|Hg17|chr5 (121427248-121426789)
               

               
               573-995, gnl|Mm7|chr18 (52894386-52893947)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               ctl (0.765345)
               

               
               amn (0.417711)
               

               
               clu (0.358938)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.765345)
               

               
               amn (0.417711)
               

               
               clu (0.358938)
               

               
               fat (0.294855)
               

               
               nca (0.273748)
               

               
               tra (0.246184)
               

               
               eru (0.240096)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

	1-186, gnl\|bosTau2\|chr7 (24619507-24619333)
	1-186, gnl\|Hg17\|chr5 (121427767-121427569)

	215-543, gnl\|bosTau2\|chr7 (24619328-24619013)
	215-543, gnl\|Hg17\|chr5 (121427564-121427243)
	215-543, gnl\|Mm7\|chr18 (52894657-52894381)

	573-995, gnl\|bosTau2\|chr7 (24619018-24618594)
	573-995, gnl\|Hg17\|chr5 (121427248-121426789)
	573-995, gnl\|Mm7\|chr18 (52894386-52893947)

	ctl (0.765345)
	amn (0.417711)
	clu (0.358938)
	fat (0.294855)
	nca (0.273748)
	tra (0.246184)
	eru (0.240096)
	aor (0.195274)
	gul (0.177588)
	mcp (0.170648)
	eye (0.170503)
	liv (0.146284)
	lin (0.145603)
	pla (0.133672)
	ret (0.128733)
	sug (0.127291)
	eje (0.0988338)