Non-Coding RNA Search

Ss1.1-rtra20_i13.5

Sequence:


               
               CAGCAAAGACTTGGTGCCCATGAACCCATCTCCGTGAATGATGACCATGTAGCGTGGCTA
GTGATTAGCTCATCTTTTATCATGAAAGTCACCGTCACTATTTAGCTTGACTATTTTCCT
CAAGAGCAGCCATCTGAAAGAGTTAGAAGAATATCTAAGGGGAAAAATAAAAACACACAA
AAATGAGCAAAACACCTAGGACCAAATTACCACTTAGCTTCAGAGCTTCCATGGCTGGTG
GTTCTTCTGATCGATGGTGTGGCACCGAGTTAGAACACAGCCTTGGCCTGGTGAGTGCTC
TCTCCAGACTGGTAAGCAGCAGCCCGTGTAGCCCTCTTTCCTGCAAAGGGGATTCTTTTC
AGCAGAAAGCCATCCATGATGGGGAAGGGAGTGACATCCCATTTTGGGGGAATCCATGAG
TTTTTCCCTTACTTCTGGTTTACAGAGGCAGTCACAAGGCACTATACTGAGTGTTATATA
AAAAAGCCATTAAATCTGAATGCCCTGGACAAGCTTTTTTTAAAAAAAATTTATATATAC
ATTTGCTGTTCAAAATTTTTATTAAAGCAATCTAAATTTTCTGGGTATAAGTCCACAGAG
TATATTGTACCATATACCATCTATACGTATATATGTGAGGAGGAGTTAGAGGAAGTTTCA
AAGTTGTGATGTTTTTAACCTATCTATATTTAAGATCATGCCATTTTGCTTTATGACGTT
TAAAAAAGGGAGTTGCAAGATGTGTAAATATATCAGAAAATAGGCATATGGGGAAGCCGT
ACATACTATTTTAAGCTACTAACTGTATGCTAAAAGCTTCTAAAGCACAAGTGCATATTT
TTATACAGCTCTTTTCACAACTTTCTGTGATCTACATGAAGTCAGACTTGAGATTTTCCT
TTCTCTTTTACCAGCCAGCCCTTCTCCATGTATTATAAATATTAAAAACTCAGTAAACAA
AATGTTTGTTTTTCTCTCAAATTCTCTGTACTCCATGCTGCATTTCTAAGAGGCATAAAC
AGCGTCTAAACTAACTGAACCAGTAGTTAGTTACTTTTTTCAAATGAAAACTGGAATGCA
GAAACACTTGGAACTAATACATGGGAAGGAAAAAAATGTCTTATCACTACATAATGTGCC
AACGTTTTTTTCTATGTTTTGTACCCAAAAAAATCGAAACATCTATGACAGTTCCATGCA
AAGAAATGTATCTAAATTATTTTGTTAGATGGTACGAGAACTTGCTTGGTCAGGACAGCA
GCTAGCTTTGTATTGTAATGCTTCATTATGTAAATGTGCTGAAAATGTTTTTGTGAAGTA
ATTGTAAACTAAATTCCTACAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAAAGACTTGGTGCCCATGAACCCATCTCCGTGAATGATGACCATGTAGCGTGGCTA
GTGATTAGCTCATCTTTTATCATGAAAGTCACCGTCACTATTTAGCTTGACTATTTTCCT
CAAGAGCAGCCATCTGAAAGAGTTAGAAGAATATCTAAGGGGAAAAATAAAAACACACAA
AAATGAGCAAAACACCTAGGACCAAATTACCACTTAGCTTCAGAGCTTCCATGGCTGGTG
GTTCTTCTGATCGATGGTGTGGCACCGAGTTAGAACACAGCCTTGGCCTGGTGAGTGCTC
TCTCCAGACTGGTAAGCAGCAGCCCGTGTAGCCCTCTTTCCTGCAAAGGGGATTCTTTTC
AGCAGAAAGCCATCCATGATGGGGAAGGGAGTGACATCCCATTTTGGGGGAATCCATGAG
TTTTTCCCTTACTTCTGGTTTACAGAGGCAGTCACAAGGCACTATACTGAGTGTTATATA
AAAAAGCCATTAAATCTGAATGCCCTGGACAAGCTTTTTTTAAAAAAAATTTATATATAC
ATTTGCTGTTCAAAATTTTTATTAAAGCAATCTAAATTTTCTGGGTATAAGTCCACAGAG
TATATTGTACCATATACCATCTATACGTATATATGTGAGGAGGAGTTAGAGGAAGTTTCA
AAGTTGTGATGTTTTTAACCTATCTATATTTAAGATCATGCCATTTTGCTTTATGACGTT
TAAAAAAGGGAGTTGCAAGATGTGTAAATATATCAGAAAATAGGCATATGGGGAAGCCGT
ACATACTATTTTAAGCTACTAACTGTATGCTAAAAGCTTCTAAAGCACAAGTGCATATTT
TTATACAGCTCTTTTCACAACTTTCTGTGATCTACATGAAGTCAGACTTGAGATTTTCCT
TTCTCTTTTACCAGCCAGCCCTTCTCCATGTATTATAAATATTAAAAACTCAGTAAACAA
AATGTTTGTTTTTCTCTCAAATTCTCTGTACTCCATGCTGCATTTCTAAGAGGCATAAAC
AGCGTCTAAACTAACTGAACCAGTAGTTAGTTACTTTTTTCAAATGAAAACTGGAATGCA
GAAACACTTGGAACTAATACATGGGAAGGAAAAAAATGTCTTATCACTACATAATGTGCC
AACGTTTTTTTCTATGTTTTGTACCCAAAAAAATCGAAACATCTATGACAGTTCCATGCA
AAGAAATGTATCTAAATTATTTTGTTAGATGGTACGAGAACTTGCTTGGTCAGGACAGCA
GCTAGCTTTGTATTGTAATGCTTCATTATGTAAATGTGCTGAAAATGTTTTTGTGAAGTA
ATTGTAAACTAAATTCCTACAGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-1344, gnl|bosTau2|chr10 (2467917-2469226)
               

               
               7-1344, gnl|Hg17|chr5 (76758449-76759773)
               

               
               7-1344, gnl|Mm7|chr13 (92088862-92087565)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1344, gnl|bosTau2|chr10 (2467917-2469226)
               

               
               7-1344, gnl|Hg17|chr5 (76758449-76759773)
               

               
               7-1344, gnl|Mm7|chr13 (92088862-92087565)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               sag (0.36543)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               sag (0.36543)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               nbm (0.0993246)

	7-1344, gnl\|bosTau2\|chr10 (2467917-2469226)
	7-1344, gnl\|Hg17\|chr5 (76758449-76759773)
	7-1344, gnl\|Mm7\|chr13 (92088862-92087565)

	pro (0.512033)
	fcc (0.39557)
	sag (0.36543)
	ova (0.258264)
	tra (0.246184)
	aor (0.195274)
	nje (0.16592)
	mga (0.160205)
	tbr (0.154178)
	nbm (0.0993246)