Non-Coding RNA Search

Ss1.1-rtra20_i8.5

Sequence:


               
               TTGCAGTTTATTTGTTCACTACTCTTCCAGCCCCTATGACAGTGCTTTGTCTCACACGCA
CAGTGAGTGCTTACTATAATGTTTTAGAAGGAATGATTGAATGAACATGGGATTATGCAT
GTCTGCACATATACTTAATAACATCTACTACTTTTT------------TTTTGGCCGCAC
CTCAGCACATGGAGTTCCCAGGTCAGGGATCAGATCTGAGCTGAAGTTGCAATTTATGCT
CAAGCTGTAGCAATACCAGATCCTTAACCCACTATGCCAGGCCAGGGATTGAACCTGTGT
CCCAGCGCTCCAGAGACACTGCTGATCCTGTTGTGCCATAGCAGGAATTCCAACTTCTAC
TACTTTTTATTGGAGTTTACTGGGCATTGTGCTAAATGCTTTCACACATTATCCCATTTT
CATTCTCTGTAGCTCTCCCATAGGACAGATACTATCCCGCCATTAGTTGTTCAGGTAAGG
CTGTCCCAAGCGACACAGTGCCCAGAGTCCAAGAGCTTCTCAGGAACCTACTTAAATGTT
TAAAACCTGAGGAAAGTCTGGCTCCAAATGCAAAAACTACAGAATAACCCAAATTAATAA
GTGTTTAATCAAATGTCTACATGTCATCAATTGCTAATTTATATCATTAATTGTGTCGGC
TTCCTTAATTATTAAATGTAGTGTTCATAAGAATGGCATTATATTTGGAAATAATGTGTA
GATGAGATTTTTTAAACTCTGCCAAGTACTTCCAGAATGCAAATGAATGCCCACGTAGTA
CTGAGAACTTGAAGATAATTATCCTGTGGATGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAGTTTATTTGTTCACTACTCTTCCAGCCCCTATGACAGTGCTTTGTCTCACACGCA
CAGTGAGTGCTTACTATAATGTTTTAGAAGGAATGATTGAATGAACATGGGATTATGCAT
GTCTGCACATATACTTAATAACATCTACTACTTTTT------------TTTTGGCCGCAC
CTCAGCACATGGAGTTCCCAGGTCAGGGATCAGATCTGAGCTGAAGTTGCAATTTATGCT
CAAGCTGTAGCAATACCAGATCCTTAACCCACTATGCCAGGCCAGGGATTGAACCTGTGT
CCCAGCGCTCCAGAGACACTGCTGATCCTGTTGTGCCATAGCAGGAATTCCAACTTCTAC
TACTTTTTATTGGAGTTTACTGGGCATTGTGCTAAATGCTTTCACACATTATCCCATTTT
CATTCTCTGTAGCTCTCCCATAGGACAGATACTATCCCGCCATTAGTTGTTCAGGTAAGG
CTGTCCCAAGCGACACAGTGCCCAGAGTCCAAGAGCTTCTCAGGAACCTACTTAAATGTT
TAAAACCTGAGGAAAGTCTGGCTCCAAATGCAAAAACTACAGAATAACCCAAATTAATAA
GTGTTTAATCAAATGTCTACATGTCATCAATTGCTAATTTATATCATTAATTGTGTCGGC
TTCCTTAATTATTAAATGTAGTGTTCATAAGAATGGCATTATATTTGGAAATAATGTGTA
GATGAGATTTTTTAAACTCTGCCAAGTACTTCCAGAATGCAAATGAATGCCCACGTAGTA
CTGAGAACTTGAAGATAATTATCCTGTGGATGAATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               437-776, gnl|bosTau2|chr21 (23949659-23950001)
               

               
               437-776, gnl|Hg17|chr15 (72049942-72051947)
               

               
               437-776, gnl|Mm7|chr9 (58299222-58298931)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               437-776, gnl|bosTau2|chr21 (23949659-23950001)
               

               
               437-776, gnl|Hg17|chr15 (72049942-72051947)
               

               
               437-776, gnl|Mm7|chr9 (58299222-58298931)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               tra (0.123092)

	437-776, gnl\|bosTau2\|chr21 (23949659-23950001)
	437-776, gnl\|Hg17\|chr15 (72049942-72051947)
	437-776, gnl\|Mm7\|chr9 (58299222-58298931)