Non-Coding RNA Search

Ss1.1-rtra21_d15.5

Sequence:


               
               CGGAGGCTGACCACAAGCATTCGCCCGGAGGAGACGCCGCCGCTGCCGCGGACTTCTTAC
GTCTCTGAGCCGGCCGCCCAAGAGTGCGGCGGAGCAAATATGAATGTTGGAGTTGCCCAC
AGCGAGGTAAATCCAAATACCCGGGTAATGAACAGCCGGGGTATGTGGCTGACATATGCA
TTGGGAGTTGGCTTGCTTCATATCGTTTTACTTAGCATTCCCTTCTTCAGTGTTCCTGTT
GCTTGGACCTTAACAAATGTTATACATAATCTGGGGATGTATGTATTTTTGCATGCTGTA
AAAGGAACACCTTTTGAAACTCCTGACCAGGGTAAAGCAAGGCTCCTTACTCATTGGGAA
CAACTGGACTATGGAGTACAGTTTACATCTTCACGGAAGTTTTTCACAATTTCTCCAATT
ATTCTGTACTTCCTGGCAAGTTTCTATACGAAGTATGATCCAACTCACTTCATCCTAAAC
ACAGCTTCTCTCCTGAGTGTGCTAATTCCCAAAATGCCACAACTACATGGTGTTCGGATC
TTTGGAATTAATAAGTATTGAAATGTTTTGAAACTGAACACAAATTTTTACAGCCACTGA
GTTTTCTGTAAGGAAGGAGTGATTAGTAAACTGCACTGTTTCTTGATAATGTGAAATGAA
AGGTATTTACATTGGAGAGCCAATTGCTGGCTCTTCATGTGTGGTTTTGAAGTGCAGATT
TTTACAAGAAGATGCCTCTGTTTAATGCATCTGGTATCTTTCTGAAGAGAGGCTTCATAG
GCAGGCTGGGCAGGCCCAGCTTCTAAGTTAAATGACTATAAAGTAAAGGTGTAGTAGATA
AATACAAGGAAATAAGAGATTTGTAAGGAACTAGGTCCAGCTTAGCTTATAATGAAGGGG
CACTATATCAGGAGCAGAAAATTTTCAATCATTCAGTCATGATCATTTAGGCAACCTTAT
GTGTAAACCAGAATCATCTCTTTACAAGTTTATTATAGATTGTTTTTATTACCATACTTA
TTCCTCTTGTGTTAATATTAAAAGGGTATATACCCTCTTGTTTTATACAAACCAATTTCT
ACCTTATGAGTGTGGGTTTTTTTGGTTTTGAACATTGTGTTGATAGATGATTCATTTTTA
CATTTATTAAGTTACTGAGTTTGTGAAGGTCCACCTTCATGACATGACTGATTGATAATA
GAAGATAGGCATCTTAGAAGCAGCCTCTTGAGTTGGCCTTCTAATTTTGGAACAGAGTGG
GTTTTGCTGCCTTTCCAGATACAAGGCTGCTAAATCAATTAAGAAAACAATTTATTTCTC
AGTTGAAGTATATGGTAACATAAAGGTCTCTGCTTATTTGGTTGAGCAATCTTATTGTTG
AAGTCTGCCATTTAGAAAACGAAATATAAAATGGACAACCACATAGCCAAAATGTGGTCT
GGCGGAAACTGCTTTTCTAGCAATAGTATCAAAGTAAATAATGGAGTCCTTTTTTTTTTA
ACAGGTCTGTAGTAAAAGATAACATCAGTTTTTCTTAGTCCTTCTGTTCTCAGTCCCACA
TTTTGCCCATCAATACATGAGTCATTGTAGATAACCCAAAATGGTAACTATTTCCAAAGC
AGCAACCATATTGAATTCTCGTGACTTAGAGAAGCTTCCTGTAGTTGCTGACATTAATTG
CAAGAAATAACTACTACTTTGAGAAGTAAATATCAAGAAAAGTTCTGATGTGGGATGAAA
CTGAAAAACCTAGTAACATTTGTATGAACAATTGAGTGAAAAGAATTATAAAGCCAACTT
AATCAGTTTGTTTCCAGCTGACTTTTGGGGGTAATGATCATTGTTTTGTATTTCAAAAGT
ATTGAGTTTAGAAATCAGTTGTATAATAATGCCTTTGTATGTCTGTCTTTTCTTATGTAT
TTTTAAATAACGAGTAATCTATACTTTAATAAAATTTTTCTTTGGTGTAAGATTAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGGCTGACCACAAGCATTCGCCCGGAGGAGACGCCGCCGCTGCCGCGGACTTCTTAC
GTCTCTGAGCCGGCCGCCCAAGAGTGCGGCGGAGCAAATATGAATGTTGGAGTTGCCCAC
AGCGAGGTAAATCCAAATACCCGGGTAATGAACAGCCGGGGTATGTGGCTGACATATGCA
TTGGGAGTTGGCTTGCTTCATATCGTTTTACTTAGCATTCCCTTCTTCAGTGTTCCTGTT
GCTTGGACCTTAACAAATGTTATACATAATCTGGGGATGTATGTATTTTTGCATGCTGTA
AAAGGAACACCTTTTGAAACTCCTGACCAGGGTAAAGCAAGGCTCCTTACTCATTGGGAA
CAACTGGACTATGGAGTACAGTTTACATCTTCACGGAAGTTTTTCACAATTTCTCCAATT
ATTCTGTACTTCCTGGCAAGTTTCTATACGAAGTATGATCCAACTCACTTCATCCTAAAC
ACAGCTTCTCTCCTGAGTGTGCTAATTCCCAAAATGCCACAACTACATGGTGTTCGGATC
TTTGGAATTAATAAGTATTGAAATGTTTTGAAACTGAACACAAATTTTTACAGCCACTGA
GTTTTCTGTAAGGAAGGAGTGATTAGTAAACTGCACTGTTTCTTGATAATGTGAAATGAA
AGGTATTTACATTGGAGAGCCAATTGCTGGCTCTTCATGTGTGGTTTTGAAGTGCAGATT
TTTACAAGAAGATGCCTCTGTTTAATGCATCTGGTATCTTTCTGAAGAGAGGCTTCATAG
GCAGGCTGGGCAGGCCCAGCTTCTAAGTTAAATGACTATAAAGTAAAGGTGTAGTAGATA
AATACAAGGAAATAAGAGATTTGTAAGGAACTAGGTCCAGCTTAGCTTATAATGAAGGGG
CACTATATCAGGAGCAGAAAATTTTCAATCATTCAGTCATGATCATTTAGGCAACCTTAT
GTGTAAACCAGAATCATCTCTTTACAAGTTTATTATAGATTGTTTTTATTACCATACTTA
TTCCTCTTGTGTTAATATTAAAAGGGTATATACCCTCTTGTTTTATACAAACCAATTTCT
ACCTTATGAGTGTGGGTTTTTTTGGTTTTGAACATTGTGTTGATAGATGATTCATTTTTA
CATTTATTAAGTTACTGAGTTTGTGAAGGTCCACCTTCATGACATGACTGATTGATAATA
GAAGATAGGCATCTTAGAAGCAGCCTCTTGAGTTGGCCTTCTAATTTTGGAACAGAGTGG
GTTTTGCTGCCTTTCCAGATACAAGGCTGCTAAATCAATTAAGAAAACAATTTATTTCTC
AGTTGAAGTATATGGTAACATAAAGGTCTCTGCTTATTTGGTTGAGCAATCTTATTGTTG
AAGTCTGCCATTTAGAAAACGAAATATAAAATGGACAACCACATAGCCAAAATGTGGTCT
GGCGGAAACTGCTTTTCTAGCAATAGTATCAAAGTAAATAATGGAGTCCTTTTTTTTTTA
ACAGGTCTGTAGTAAAAGATAACATCAGTTTTTCTTAGTCCTTCTGTTCTCAGTCCCACA
TTTTGCCCATCAATACATGAGTCATTGTAGATAACCCAAAATGGTAACTATTTCCAAAGC
AGCAACCATATTGAATTCTCGTGACTTAGAGAAGCTTCCTGTAGTTGCTGACATTAATTG
CAAGAAATAACTACTACTTTGAGAAGTAAATATCAAGAAAAGTTCTGATGTGGGATGAAA
CTGAAAAACCTAGTAACATTTGTATGAACAATTGAGTGAAAAGAATTATAAAGCCAACTT
AATCAGTTTGTTTCCAGCTGACTTTTGGGGGTAATGATCATTGTTTTGTATTTCAAAAGT
ATTGAGTTTAGAAATCAGTTGTATAATAATGCCTTTGTATGTCTGTCTTTTCTTATGTAT
TTTTAAATAACGAGTAATCTATACTTTAATAAAATTTTTCTTTGGTGTAAGATTAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822223|gb|AAY14772.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822223|gb|AAY14772.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               664-903, - strand, RNAz p=0.982453
               

               
               1213-1326, + strand, RNAz p=0.991198

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               664-903, - strand, RNAz p=0.982453
               

               
               1213-1326, + strand, RNAz p=0.991198

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016467, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016467, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               100-277, gnl|bosTau2|chr19 (32527853-32527676)
               

               
               100-277, gnl|Hg17|chr17 (35333982-35333805)
               

               
               100-277, gnl|Mm7|chr11 (98693154-98692977)
               


               
               427-1975, gnl|bosTau2|chr2 (642531-644061)
               

               
               427-1975, gnl|Hg17|chr2 (190462133-190460555)
               

               
               427-1975, gnl|Mm7|chr1 (53542350-53543767)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-277, gnl|bosTau2|chr19 (32527853-32527676)
               

               
               100-277, gnl|Hg17|chr17 (35333982-35333805)
               

               
               100-277, gnl|Mm7|chr11 (98693154-98692977)
               


               
               427-1975, gnl|bosTau2|chr2 (642531-644061)
               

               
               427-1975, gnl|Hg17|chr2 (190462133-190460555)
               

               
               427-1975, gnl|Mm7|chr1 (53542350-53543767)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               mgp (2.30681)
               

               
               ret (0.901133)
               

               
               cbl (0.688784)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               mga (0.480615)
               

               
               cty (0.41632)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (2.30681)
               

               
               ret (0.901133)
               

               
               cbl (0.688784)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               mga (0.480615)
               

               
               cty (0.41632)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	664-903, - strand, RNAz p=0.982453
	1213-1326, + strand, RNAz p=0.991198

	100-277, gnl\|bosTau2\|chr19 (32527853-32527676)
	100-277, gnl\|Hg17\|chr17 (35333982-35333805)
	100-277, gnl\|Mm7\|chr11 (98693154-98692977)

	427-1975, gnl\|bosTau2\|chr2 (642531-644061)
	427-1975, gnl\|Hg17\|chr2 (190462133-190460555)
	427-1975, gnl\|Mm7\|chr1 (53542350-53543767)

	mgp (2.30681)
	ret (0.901133)
	cbl (0.688784)
	sin (0.524843)
	kid (0.518941)
	mga (0.480615)
	cty (0.41632)
	thg (0.380373)
	tra (0.369276)
	sag (0.36543)
	vin (0.332557)
	fco (0.314416)
	tes (0.207814)
	hea (0.204499)
	mgm (0.180343)
	fty (0.17584)
	eye (0.170503)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	ste (0.135208)
	cov (0.132153)
	ova (0.129132)
	med (0.116252)
	eje (0.0988338)
	ldo (0.0970026)