Non-Coding RNA Search

Ss1.1-rtra21_d5.5

Sequence:


               
               CATGCATGTGTAACTATTATCTGTAGGCTGTTACTATGCTAGTCTCCTATTTAGGTGATT
TTTTGCTTCAAAGATGTAATTGTTTAAATTCTATCTCTAGGGGGAAAATTTAGTGAAAAA
TTAAAAATGCTTTTCCCACTTGTAAAATAAAATTTTAAAAACTGATTTCATAATGCCCCA
AATATCAAATATGTTCAATCTGTTACTTTTGAGATTTTAGGTTACTGCAATTCTTATGTT
TAGAGTGACGTCAGAAAAGTATGGGGGTAGTTTTTCTAGCCTTGAAACTTATTTATGTTG
CCTTGGTAGGTAATTTGCTGTTACTTGAAAATTTAGTGTATTCATCTGTAAAATAACTTT
TCTAGTACTAGAGATGCCATTGAATTTCAAAAAAAATGCAGTCTTTCTAAATCTCATTCC
TTTGGTATACTGATTTGATACCTCTGGTACATTAATTTAGTAAGACTTAAATTTATAGTT
TGATAAAATATAATAGCTAGGAGTTCCTGCTGTGGCAAAACAGGATTGGTGGCACCTCTG
CAGCACTGGGACACAGGTTTGATCCCCAGCCCAGCACAGTGGGTTAAAGATCCTGCGTTG
TAGATCACAGCTGTGGCTCATGTTCGATCCCTGGCCTAGGAACTTCATATGCCATGGAAC
AGCCAAAAAGAAAGAAAATAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGCATGTGTAACTATTATCTGTAGGCTGTTACTATGCTAGTCTCCTATTTAGGTGATT
TTTTGCTTCAAAGATGTAATTGTTTAAATTCTATCTCTAGGGGGAAAATTTAGTGAAAAA
TTAAAAATGCTTTTCCCACTTGTAAAATAAAATTTTAAAAACTGATTTCATAATGCCCCA
AATATCAAATATGTTCAATCTGTTACTTTTGAGATTTTAGGTTACTGCAATTCTTATGTT
TAGAGTGACGTCAGAAAAGTATGGGGGTAGTTTTTCTAGCCTTGAAACTTATTTATGTTG
CCTTGGTAGGTAATTTGCTGTTACTTGAAAATTTAGTGTATTCATCTGTAAAATAACTTT
TCTAGTACTAGAGATGCCATTGAATTTCAAAAAAAATGCAGTCTTTCTAAATCTCATTCC
TTTGGTATACTGATTTGATACCTCTGGTACATTAATTTAGTAAGACTTAAATTTATAGTT
TGATAAAATATAATAGCTAGGAGTTCCTGCTGTGGCAAAACAGGATTGGTGGCACCTCTG
CAGCACTGGGACACAGGTTTGATCCCCAGCCCAGCACAGTGGGTTAAAGATCCTGCGTTG
TAGATCACAGCTGTGGCTCATGTTCGATCCCTGGCCTAGGAACTTCATATGCCATGGAAC
AGCCAAAAAGAAAGAAAATAAATT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-440, gnl|bosTau2|chr9 (59527294-59526862)
               

               
               1-440, gnl|Hg17|chr3 (133879156-133879604)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-440, gnl|bosTau2|chr9 (59527294-59526862)
               

               
               1-440, gnl|Hg17|chr3 (133879156-133879604)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pro (0.512033)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	1-440, gnl\|bosTau2\|chr9 (59527294-59526862)
	1-440, gnl\|Hg17\|chr3 (133879156-133879604)

	pro (0.512033)
	cmu (0.186393)
	gul (0.177588)
	fbs (0.175346)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	cty (0.10408)