Ss1.1-rtra21_k10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTGAGGTGTCAGAGAGAGCAATGGAAAGTCACAAGGCAGAAGAAGAGGTGGTGGATA TTCTTCGACTGAATGTGGGTGGCTGTATTTACACAGCCAGGCGTGAATCCTTGTGCCGCT TTAAGGACTCAATGCTGGCATCCATGTTCAGTGGTCGTTTTCCTCTAAAAACAGATGAAT CAGGGGCTTGTGTTATCGACCGTGATGGACATCTATTTAAATACCTTTTGGATTATCTTC ACGGAGAAGTTCATATTCCCACAGAGGAGCAGACCCGCATTGCTCTGCAGGAAGAAGCTG ATTACTTTGGCATCCCTTATCCGTACAGCCTGTCTGACCACTTAGCCAATGAAATGGAGA CATATTCTTTAAGGCTTTAACAGACTTCTGTGATTCGTATGGTTTAGTTTGCAATAAACC AACGGTTTGGGTTCTCCACTATCTTAACACATCTGGTGCAAGCTGTGAGAGTAGAATTAT TGGTGTATATTCCACAAAAACTGATGGAACAGATGCTATTGATAAGCAGCTGGGAGGAAG AATTCACAGTAAAAGCATTTTTAAAAGAGAGGCGGGAAATAATGTTCAGTACATTTGGAG CTATTATTCAGTAGCAGAATTGAAGAAAATGATGGATGCCTTTGATGCCTGGGAAGGAAA AGGTGTTAGCTACTGGCGGGTGCCTCACGAGCTGATAGAATGTTGGACTCTGGAAGAGCG GCCTTTACTTGGAAGCCTACATCACATGGCCCCAATTCGAAAGAGGTTGTCTGTTCTGTT AATTTTGATTTTTTTAAAAAATAAATCTGCGACGTATATTTTTACTGCTTTTATTGCGGG AATGAATAATGTTTCTTGACCTCAGTGAGCTTATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTGAGGTGTCAGAGAGAGCAATGGAAAGTCACAAGGCAGAAGAAGAGGTGGTGGATA TTCTTCGACTGAATGTGGGTGGCTGTATTTACACAGCCAGGCGTGAATCCTTGTGCCGCT TTAAGGACTCAATGCTGGCATCCATGTTCAGTGGTCGTTTTCCTCTAAAAACAGATGAAT CAGGGGCTTGTGTTATCGACCGTGATGGACATCTATTTAAATACCTTTTGGATTATCTTC ACGGAGAAGTTCATATTCCCACAGAGGAGCAGACCCGCATTGCTCTGCAGGAAGAAGCTG ATTACTTTGGCATCCCTTATCCGTACAGCCTGTCTGACCACTTAGCCAATGAAATGGAGA CATATTCTTTAAGGCTTTAACAGACTTCTGTGATTCGTATGGTTTAGTTTGCAATAAACC AACGGTTTGGGTTCTCCACTATCTTAACACATCTGGTGCAAGCTGTGAGAGTAGAATTAT TGGTGTATATTCCACAAAAACTGATGGAACAGATGCTATTGATAAGCAGCTGGGAGGAAG AATTCACAGTAAAAGCATTTTTAAAAGAGAGGCGGGAAATAATGTTCAGTACATTTGGAG CTATTATTCAGTAGCAGAATTGAAGAAAATGATGGATGCCTTTGATGCCTGGGAAGGAAA AGGTGTTAGCTACTGGCGGGTGCCTCACGAGCTGATAGAATGTTGGACTCTGGAAGAGCG GCCTTTACTTGGAAGCCTACATCACATGGCCCCAATTCGAAAGAGGTTGTCTGTTCTGTT AATTTTGATTTTTTTAAAAAATAAATCTGCGACGTATATTTTTACTGCTTTTATTGCGGG AATGAATAATGTTTCTTGACCTCAGTGAGCTTATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 8-184, + strand, RNAz p=0.9987 | |
| 44-184, - strand, RNAz p=0.996959 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 8-184, + strand, RNAz p=0.9987 | |
| 44-184, - strand, RNAz p=0.996959 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK055884, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 8-184, gnl|bosTau2|chr11 (43746956-43746780) | |
| 8-184, gnl|canFam2|chr37 (12593629-12593777) | |
| 8-184, gnl|dasNov1|scaffold_5555 (81510-81361) | |
| 8-184, gnl|echTel1|scaffold_313898 (47140-47397) | |
| 8-184, gnl|galGal2|chr7 (12076599-12076747) | |
| 8-184, gnl|hg17|chr2 (201197067-201197215) | |
| 8-184, gnl|Hg17|chr2 (201197261-201197085) | |
| 8-184, gnl|loxAfr1|scaffold_52174 (8157-8305) | |
| 8-184, gnl|mm7|chr1 (58218201-58218347) | |
| 8-184, gnl|Mm7|chr1 (58218390-58218217) | |
| 8-184, gnl|monDom2|scaffold_2 (110919795-110919943) | |
| 8-184, gnl|oryCun1|scaffold_191493 (37521-37373) | |
| 8-184, gnl|panTro1|chr13 (91173397-91173545) | |
| 8-184, gnl|rheMac2|chr12 (64099328-64099476) | |
| 8-184, gnl|rn3|chr9 (56775708-56775855) | |
| 8-184, gnl|xenTro1|scaffold_289 (187012-186878) | |
| 369-567, gnl|bosTau2|chr11 (43742368-43742170) | |
| 369-567, gnl|canFam2|chr37 (12589475-12589761) | |
| 369-567, gnl|dasNov1|scaffold_5555 (85729-85449) | |
| 369-567, gnl|echTel1|scaffold_313898 (42149-42435) | |
| 369-567, gnl|galGal2|chr7 (12074900-12075158) | |
| 369-567, gnl|hg17|chr2 (201189057-201189343) | |
| 369-567, gnl|Hg17|chr2 (201189318-201189120) | |
| 369-567, gnl|loxAfr1|scaffold_52174 (2869-3154) | |
| 369-567, gnl|mm7|chr1 (58213717-58214010) | |
| 369-567, gnl|Mm7|chr1 (58213987-58213789) | |
| 369-567, gnl|monDom2|scaffold_2 (110915527-110915806) | |
| 369-567, gnl|oryCun1|scaffold_191493 (42901-42616) | |
| 369-567, gnl|panTro1|chr13 (91165384-91165670) | |
| 369-567, gnl|rheMac2|chr12 (64094517-64094802) | |
| 369-567, gnl|rn3|chr9 (56771050-56771342) | |
| 369-567, gnl|xenTro1|scaffold_289 (193220-192942) | |
| 661-876, gnl|bosTau2|chr11 (43735340-43735132) | |
| 661-876, gnl|Hg17|chr2 (201183505-201183292) | |
| 661-876, gnl|Mm7|chr1 (58209968-58209791) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-184, gnl|bosTau2|chr11 (43746956-43746780) | |
| 8-184, gnl|canFam2|chr37 (12593629-12593777) | |
| 8-184, gnl|dasNov1|scaffold_5555 (81510-81361) | |
| 8-184, gnl|echTel1|scaffold_313898 (47140-47397) | |
| 8-184, gnl|galGal2|chr7 (12076599-12076747) | |
| 8-184, gnl|hg17|chr2 (201197067-201197215) | |
| 8-184, gnl|Hg17|chr2 (201197261-201197085) | |
| 8-184, gnl|loxAfr1|scaffold_52174 (8157-8305) | |
| 8-184, gnl|mm7|chr1 (58218201-58218347) | |
| 8-184, gnl|Mm7|chr1 (58218390-58218217) | |
| 8-184, gnl|monDom2|scaffold_2 (110919795-110919943) | |
| 8-184, gnl|oryCun1|scaffold_191493 (37521-37373) | |
| 8-184, gnl|panTro1|chr13 (91173397-91173545) | |
| 8-184, gnl|rheMac2|chr12 (64099328-64099476) | |
| 8-184, gnl|rn3|chr9 (56775708-56775855) | |
| 8-184, gnl|xenTro1|scaffold_289 (187012-186878) | |
| 369-567, gnl|bosTau2|chr11 (43742368-43742170) | |
| 369-567, gnl|canFam2|chr37 (12589475-12589761) | |
| 369-567, gnl|dasNov1|scaffold_5555 (85729-85449) | |
| 369-567, gnl|echTel1|scaffold_313898 (42149-42435) | |
| 369-567, gnl|galGal2|chr7 (12074900-12075158) | |
| 369-567, gnl|hg17|chr2 (201189057-201189343) | |
| 369-567, gnl|Hg17|chr2 (201189318-201189120) | |
| 369-567, gnl|loxAfr1|scaffold_52174 (2869-3154) | |
| 369-567, gnl|mm7|chr1 (58213717-58214010) | |
| 369-567, gnl|Mm7|chr1 (58213987-58213789) | |
| 369-567, gnl|monDom2|scaffold_2 (110915527-110915806) | |
| 369-567, gnl|oryCun1|scaffold_191493 (42901-42616) | |
| 369-567, gnl|panTro1|chr13 (91165384-91165670) | |
| 369-567, gnl|rheMac2|chr12 (64094517-64094802) | |
| 369-567, gnl|rn3|chr9 (56771050-56771342) | |
| 369-567, gnl|xenTro1|scaffold_289 (193220-192942) | |
| 661-876, gnl|bosTau2|chr11 (43735340-43735132) | |
| 661-876, gnl|Hg17|chr2 (201183505-201183292) | |
| 661-876, gnl|Mm7|chr1 (58209968-58209791) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| cje (0.165235) | |
| tra (0.123092) |