Non-Coding RNA Search

Ss1.1-rtra22_f9.5

Sequence:


               
               TGAATAAATGTAATGTGTCCATAAAATAATGAGACTAAGATGAGTTGAATGATATGAAAG
ACTATCTTTCCCAGTGTCAACAGGAACAAGAATCATTTATAGATTATAAGTCATTGAAGG
AAAATCTTGCAAGGTGTTGGACCCTTACTGAAGCAGAGTCAGTATAAGAAACTCAGTGGA
AGTATGGAGGCGTATGTATATGGTGGCCTCAGTCTGTATCTCTGGAGAAGGAGGAAAAAG
CCTTATCTTCATTACAAGAAGAATTAAGAAAACTAAGAGAACAGATTAGGATATTAGAAG
ATAAAGGTACAAGTGCTGAATTAGTTACAGAAAATCAGAAACTTAAACCAGATTTAGAGA
AAGAAAAGCTGAAAACACACAGCTTCCTTAATCAAAGGTGGGAATGGATGGCAGAAGCAA
AGATGCTAAGGAGGGAACTGGAAAGAGAACGACTGATAACCGTGGCTTGGGTCTCTGGCA
GCAGCCTGAAAGATTCGTTGGAAAGGATGAAGCTAGATGCTAGAAGGTGGCCTTTAACAT
AATATAGACATGAGCTAGTAAGTATGTGAATTAGGGCATAGCAGGAGTGGAAAGGAGACA
AATCTAAATAATATTTAGTAAGTAGAATTGATGGTATTTTCTGTGAAAGAGAAATAGAAA
GGAATAATGACTTCCAGACTTCTGGATTGAGTCAACAGTTAGTGATATCATTGTGCTTAA
GGAGTACCAGAAGGTTTTGGGTAAGGGGAATTGGAAGTGAGAATTGTATTGGAGCTATCT
ATTGACATACAAGTAGGGGAAATTAGTTGGCTTTAGTTATATGACTCTCTAGCCCAGATG
GTTTTTCGGACTCCTGGGGAACACCGACATCTTAGAGGTTATAGAGAAAGAAAGCTGAGA
AAGACCACCAGAGAGTGGCACATGAAAAGCCAAAAATCATCTCAAGTAAAAGGGATATTT
CAGTGTTAAACACTTAAAAAAAAAAAAAAAAGATTGCATGTCTTGGCTGGGAATTGGCTG
GCAATGGATGGGTTACAGATTGTTCCAGTGAAGTAGTGACAGAAGCCTAACTATAAAGAT
TGAGAACTGTAATTGTAGACATTTTCTGTAATTCTTAGCTGTAAGAGAGAGAGAAAAAGA
GACTGTTTATAAGAAATGTGTACATATTCCTGGTGAAGGATGAAGCCACTTGGAGGGTGG
ATTAATTTTTATGGAAAAGGAGGAAAAAATAATGGAAACACATATCTCATTATTTTATTG
TCACATTTATATTTATTTATTGTTTCCCCCTCTTTGCCAGCACAATTACGTTTGTCTTTT
TCATCAATAAGTTTTTCCTAAATGGTGTCTTTATACATGATCAGAAGCTCTTCACTGACT
TTGTTAATGATGTTAAAGATTATCTTAAAGACATGAAGGAATATCAAGTAGATAATGATG
GAGTGTTTGAGAAGTTGGATGGATATATATATAAACACTTCTTTGGTCACACCTTTTCCC
CTCCATATGGACCCAGTCGACCAGATAAAAAGCAACGTATGGTAAATATTGAAAGCTCCA
GGCATCGAAAACAAGAGCAGAAGCATCCTCAGCCACAACCTTATAAAAGGGAAGGTAAAT
GGCATAAATATGGTCGCACTAATGGAAGATATATGGCAAACCTTGAAATAGAATTGGGGC
AATTACCTTTTGATCCTAAATATTGACCATCACAATTAAGTTAAATTAGAAAACTGTAAC
AGAAACTTGGATGCTTTCTATGTTTGGTGTTGAAACTAAGATGAAATTATCAAAATAACA
ATGTCTTTTTATCATTTCTATGTATCAGTTTGATGACTTTATATTATTACTCAGAAGCAT
CAAGCAAAAGCTTACTAACTTGCATTTTCCTGTAGTTTAGCTTTGCTGAATTTTTCTGGC
ACTGAAAATGTTCAACTGTAGTTTTATTAAGGAAGCCAAGCATGCAACAAATTTTGTGCA
TGAAATGAGACTTCCTTTCAGTGTATGAGCTTAAAGCAAGCTCAAATCATACATGACAAA
GTGTAATTAACACTGATATTTGTGTTAAATTTACAGTAGAGCTTGAAAAAAGTACATTGT
GATGGAATTTCATCTTTAACATTTTATAATCTTACACTCACTTCTTGTCTTTTTGTGGGT
TCAAGAGCCCGTTGACTTGTGAAGAATTTGCTGCCTTCTTATGAGCTTGCTGACTTGTTC
TCTTGTGAAATTTCTTAAACATCTGAATATTGTGGAAGAAACAATAAAACTACACCATGA
GGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATAAATGTAATGTGTCCATAAAATAATGAGACTAAGATGAGTTGAATGATATGAAAG
ACTATCTTTCCCAGTGTCAACAGGAACAAGAATCATTTATAGATTATAAGTCATTGAAGG
AAAATCTTGCAAGGTGTTGGACCCTTACTGAAGCAGAGTCAGTATAAGAAACTCAGTGGA
AGTATGGAGGCGTATGTATATGGTGGCCTCAGTCTGTATCTCTGGAGAAGGAGGAAAAAG
CCTTATCTTCATTACAAGAAGAATTAAGAAAACTAAGAGAACAGATTAGGATATTAGAAG
ATAAAGGTACAAGTGCTGAATTAGTTACAGAAAATCAGAAACTTAAACCAGATTTAGAGA
AAGAAAAGCTGAAAACACACAGCTTCCTTAATCAAAGGTGGGAATGGATGGCAGAAGCAA
AGATGCTAAGGAGGGAACTGGAAAGAGAACGACTGATAACCGTGGCTTGGGTCTCTGGCA
GCAGCCTGAAAGATTCGTTGGAAAGGATGAAGCTAGATGCTAGAAGGTGGCCTTTAACAT
AATATAGACATGAGCTAGTAAGTATGTGAATTAGGGCATAGCAGGAGTGGAAAGGAGACA
AATCTAAATAATATTTAGTAAGTAGAATTGATGGTATTTTCTGTGAAAGAGAAATAGAAA
GGAATAATGACTTCCAGACTTCTGGATTGAGTCAACAGTTAGTGATATCATTGTGCTTAA
GGAGTACCAGAAGGTTTTGGGTAAGGGGAATTGGAAGTGAGAATTGTATTGGAGCTATCT
ATTGACATACAAGTAGGGGAAATTAGTTGGCTTTAGTTATATGACTCTCTAGCCCAGATG
GTTTTTCGGACTCCTGGGGAACACCGACATCTTAGAGGTTATAGAGAAAGAAAGCTGAGA
AAGACCACCAGAGAGTGGCACATGAAAAGCCAAAAATCATCTCAAGTAAAAGGGATATTT
CAGTGTTAAACACTTAAAAAAAAAAAAAAAAGATTGCATGTCTTGGCTGGGAATTGGCTG
GCAATGGATGGGTTACAGATTGTTCCAGTGAAGTAGTGACAGAAGCCTAACTATAAAGAT
TGAGAACTGTAATTGTAGACATTTTCTGTAATTCTTAGCTGTAAGAGAGAGAGAAAAAGA
GACTGTTTATAAGAAATGTGTACATATTCCTGGTGAAGGATGAAGCCACTTGGAGGGTGG
ATTAATTTTTATGGAAAAGGAGGAAAAAATAATGGAAACACATATCTCATTATTTTATTG
TCACATTTATATTTATTTATTGTTTCCCCCTCTTTGCCAGCACAATTACGTTTGTCTTTT
TCATCAATAAGTTTTTCCTAAATGGTGTCTTTATACATGATCAGAAGCTCTTCACTGACT
TTGTTAATGATGTTAAAGATTATCTTAAAGACATGAAGGAATATCAAGTAGATAATGATG
GAGTGTTTGAGAAGTTGGATGGATATATATATAAACACTTCTTTGGTCACACCTTTTCCC
CTCCATATGGACCCAGTCGACCAGATAAAAAGCAACGTATGGTAAATATTGAAAGCTCCA
GGCATCGAAAACAAGAGCAGAAGCATCCTCAGCCACAACCTTATAAAAGGGAAGGTAAAT
GGCATAAATATGGTCGCACTAATGGAAGATATATGGCAAACCTTGAAATAGAATTGGGGC
AATTACCTTTTGATCCTAAATATTGACCATCACAATTAAGTTAAATTAGAAAACTGTAAC
AGAAACTTGGATGCTTTCTATGTTTGGTGTTGAAACTAAGATGAAATTATCAAAATAACA
ATGTCTTTTTATCATTTCTATGTATCAGTTTGATGACTTTATATTATTACTCAGAAGCAT
CAAGCAAAAGCTTACTAACTTGCATTTTCCTGTAGTTTAGCTTTGCTGAATTTTTCTGGC
ACTGAAAATGTTCAACTGTAGTTTTATTAAGGAAGCCAAGCATGCAACAAATTTTGTGCA
TGAAATGAGACTTCCTTTCAGTGTATGAGCTTAAAGCAAGCTCAAATCATACATGACAAA
GTGTAATTAACACTGATATTTGTGTTAAATTTACAGTAGAGCTTGAAAAAAGTACATTGT
GATGGAATTTCATCTTTAACATTTTATAATCTTACACTCACTTCTTGTCTTTTTGTGGGT
TCAAGAGCCCGTTGACTTGTGAAGAATTTGCTGCCTTCTTATGAGCTTGCTGACTTGTTC
TCTTGTGAAATTTCTTAAACATCTGAATATTGTGGAAGAAACAATAAAACTACACCATGA
GGAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               92-468, gnl|bosTau2|chr10 (38738001-38737625)
               

               
               92-468, gnl|Hg17|chr15 (53440455-53440077)
               

               
               92-468, gnl|Mm7|chr9 (73044400-73044786)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-468, gnl|bosTau2|chr10 (38738001-38737625)
               

               
               92-468, gnl|Hg17|chr15 (53440455-53440077)
               

               
               92-468, gnl|Mm7|chr9 (73044400-73044786)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

Help | Less info


               
               ret (1.02987)
               

               
               sag (0.730861)
               

               
               tes (0.623441)
               

               
               liv (0.585137)
               

               
               sug (0.509165)
               

               
               bla (0.497389)
               

               
               pgl (0.473934)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.02987)
               

               
               sag (0.730861)
               

               
               tes (0.623441)
               

               
               liv (0.585137)
               

               
               sug (0.509165)
               

               
               bla (0.497389)
               

               
               pgl (0.473934)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               ova (0.387397)
               

               
               cmu (0.372787)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	92-468, gnl\|bosTau2\|chr10 (38738001-38737625)
	92-468, gnl\|Hg17\|chr15 (53440455-53440077)
	92-468, gnl\|Mm7\|chr9 (73044400-73044786)

	ret (1.02987)
	sag (0.730861)
	tes (0.623441)
	liv (0.585137)
	sug (0.509165)
	bla (0.497389)
	pgl (0.473934)
	cbl (0.45919)
	spl (0.429553)
	mas (0.42061)
	amn (0.417711)
	lyg (0.399308)
	ova (0.387397)
	cmu (0.372787)
	tbr (0.308356)
	fat (0.294855)
	lin (0.291206)
	tra (0.246184)
	cbe (0.239234)
	pan (0.23596)
	ecc (0.23007)
	cty (0.20816)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	gul (0.177588)
	rec (0.17307)
	mcp (0.170648)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	pty (0.142714)
	ute (0.132784)
	kid (0.129735)
	nbm (0.0993246)
	ldo (0.0970026)