Non-Coding RNA Search

Ss1.1-rtra22_h23.5

Sequence:


               
               CTTCACTGAAAATTAGGGATAGAACTAGTTGAAGAGACCCCTTTAATTGCTACATTTAGT
TTTTCCCACTGAGCAGTATCAGAAACTAAAAAGTATTATATAGATTAATAACTAGCTTGC
TGTTTTCTGTTCTTACAAAGAGTGAAATCTTTTTAATTAAATGGATGAAGATTCCAGCCA
ACTCAAATGCAGACCAGCTAGTGAACTGTTGAAACATCAGCTTCTAAGTCATCTTTGCAC
CACTAGCTAATAATTTGAACCCTGAGTGCTTCAGATACTAAACTTCATCCTAATTGTTTC
TAAGGAGCAGTTAAAAGCATTATAATAAGTAGGTAGGCATGTTAAGATTAAAATTAACAT
TTGGGGGACAGAATTGTATCTTTTAAAATGTCATTGGTCTTTATTACAAGAGGAATATTT
GATTTAGGCTATTTCAGAACAGGTTTTGAACACATTTGGATTTATCTTCACTGAGATTAT
GTTGTGACCACACTAATACCCACTTAAAGAAAAGCTAAATAATCAGAGAGCTCTATATAA
ACTAGTTTTTACCTTTACTTTTGGAAATTTATTTCTTTTCTTTGGTTTTTGTGCTCTTAC
TGAAGTTCCAGTGGCTTGAAACTGTTTTTATTCTCTTAATATGACAAAACTGAAAAATAG
TTTGCTGATTTTGAAACTTTCTCAGTTTAATTCACTGAGGTTCATATTAGGCACATTTGG
CGAAAGAAATCGAGGCACACGTTTGGAGTCATGGAATGACTGCTTATAAAATCAGTCGGG
GGAGTAGCAGATCCTCACATCGTGCAGTGTCCTGAAATGTAATGGATTATCTCTGAGGGG
TTGATAAGAAAAATGTTTAGATGTACTGTGTTTACAGCCAGTTATTTTAATTTACTTAAT
GGAAATCAAGTGAGTAAAAGGTAACATAGTTCAAGATATTTTATTCTAATATCTAAATAA
AATCAGTTTACTTGAGTGGTTGAAGACATTTGCATGAAATTGCGCCTGGTGCAATATTTG
ATATTTATAACTCTCCCCATAACTGTTGTGTTGCATTTTTTTCCTTCTATTGGCACCCCT
TTTAGAAATGTCCTGCAGTGTCATTTTTTGCCTATTTCAGCCATGGGACTTTTTTCATAA
TATTAATGTAAAGATGTTTGTGTTATTGTTTATAAATTACAATTGTAAATAAACCAGTAC
AGTTTGCTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCACTGAAAATTAGGGATAGAACTAGTTGAAGAGACCCCTTTAATTGCTACATTTAGT
TTTTCCCACTGAGCAGTATCAGAAACTAAAAAGTATTATATAGATTAATAACTAGCTTGC
TGTTTTCTGTTCTTACAAAGAGTGAAATCTTTTTAATTAAATGGATGAAGATTCCAGCCA
ACTCAAATGCAGACCAGCTAGTGAACTGTTGAAACATCAGCTTCTAAGTCATCTTTGCAC
CACTAGCTAATAATTTGAACCCTGAGTGCTTCAGATACTAAACTTCATCCTAATTGTTTC
TAAGGAGCAGTTAAAAGCATTATAATAAGTAGGTAGGCATGTTAAGATTAAAATTAACAT
TTGGGGGACAGAATTGTATCTTTTAAAATGTCATTGGTCTTTATTACAAGAGGAATATTT
GATTTAGGCTATTTCAGAACAGGTTTTGAACACATTTGGATTTATCTTCACTGAGATTAT
GTTGTGACCACACTAATACCCACTTAAAGAAAAGCTAAATAATCAGAGAGCTCTATATAA
ACTAGTTTTTACCTTTACTTTTGGAAATTTATTTCTTTTCTTTGGTTTTTGTGCTCTTAC
TGAAGTTCCAGTGGCTTGAAACTGTTTTTATTCTCTTAATATGACAAAACTGAAAAATAG
TTTGCTGATTTTGAAACTTTCTCAGTTTAATTCACTGAGGTTCATATTAGGCACATTTGG
CGAAAGAAATCGAGGCACACGTTTGGAGTCATGGAATGACTGCTTATAAAATCAGTCGGG
GGAGTAGCAGATCCTCACATCGTGCAGTGTCCTGAAATGTAATGGATTATCTCTGAGGGG
TTGATAAGAAAAATGTTTAGATGTACTGTGTTTACAGCCAGTTATTTTAATTTACTTAAT
GGAAATCAAGTGAGTAAAAGGTAACATAGTTCAAGATATTTTATTCTAATATCTAAATAA
AATCAGTTTACTTGAGTGGTTGAAGACATTTGCATGAAATTGCGCCTGGTGCAATATTTG
ATATTTATAACTCTCCCCATAACTGTTGTGTTGCATTTTTTTCCTTCTATTGGCACCCCT
TTTAGAAATGTCCTGCAGTGTCATTTTTTGCCTATTTCAGCCATGGGACTTTTTTCATAA
TATTAATGTAAAGATGTTTGTGTTATTGTTTATAAATTACAATTGTAAATAAACCAGTAC
AGTTTGCTCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1024-1140, - strand, RNAz p=0.854955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1024-1140, - strand, RNAz p=0.854955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1213, gnl|bosTau2|chr1 (24173951-24175149)
               

               
               1-1213, gnl|Hg17|chr3 (101525575-101526760)
               

               
               1-1213, gnl|Mm7|chr16 (57027420-57026286)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1213, gnl|bosTau2|chr1 (24173951-24175149)
               

               
               1-1213, gnl|Hg17|chr3 (101525575-101526760)
               

               
               1-1213, gnl|Mm7|chr16 (57027420-57026286)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               tes (0.623441)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	1-1213, gnl\|bosTau2\|chr1 (24173951-24175149)
	1-1213, gnl\|Hg17\|chr3 (101525575-101526760)
	1-1213, gnl\|Mm7\|chr16 (57027420-57026286)

	tes (0.623441)
	gul (0.355177)
	rec (0.346141)
	kid (0.259471)
	tra (0.246184)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	hlv (0.139256)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)
	cty (0.10408)