Non-Coding RNA Search

Ss1.1-rtra23_l12.5

Sequence:


               
               TGATTATGCAATAGGCAACTAATGTCAATTAGGTGGGTCTTGGCTCCTGCCCAGATGTCT
TTTCAGCACTGCATGTCACTTGCATCTAATGATATTTACATTTCTTTATGAATTTGGGGA
ATCATCCCAATAGCATAGAGAATGCTAAGAATAAAATAATGTAAAATTATTGGAGGACCA
CTTACTCATTTTATAGGTTGTCCCAGCTGTCTCCTTTTTTTCTTTTACTCTTTTCTGGCA
TACAACTTGGTGAGAAATTGTGCCTTCTCCCTGAGATTACAGGAGAATGGGGAAGAGGGT
GAGGGATGAGAAGAGGGGATTCCAAAATTAATTATTTTTGTTAGTCTGGGTTTCTTTTAT
GTTGCACAATAAAGGAAAACTAGAAAGCTGTTTATATTGAGGACAGGAATCTCAGGAAAA
ATAAGGCCATAATTCAAGTCATTATTTTTAACTTTGTGTGGTTTTGGAATGAGAAACATA
AAACACAAAGCTGTCTACTTTGTACCTCAGAATTAAGAATGGAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTATGCAATAGGCAACTAATGTCAATTAGGTGGGTCTTGGCTCCTGCCCAGATGTCT
TTTCAGCACTGCATGTCACTTGCATCTAATGATATTTACATTTCTTTATGAATTTGGGGA
ATCATCCCAATAGCATAGAGAATGCTAAGAATAAAATAATGTAAAATTATTGGAGGACCA
CTTACTCATTTTATAGGTTGTCCCAGCTGTCTCCTTTTTTTCTTTTACTCTTTTCTGGCA
TACAACTTGGTGAGAAATTGTGCCTTCTCCCTGAGATTACAGGAGAATGGGGAAGAGGGT
GAGGGATGAGAAGAGGGGATTCCAAAATTAATTATTTTTGTTAGTCTGGGTTTCTTTTAT
GTTGCACAATAAAGGAAAACTAGAAAGCTGTTTATATTGAGGACAGGAATCTCAGGAAAA
ATAAGGCCATAATTCAAGTCATTATTTTTAACTTTGTGTGGTTTTGGAATGAGAAACATA
AAACACAAAGCTGTCTACTTTGTACCTCAGAATTAAGAATGGAAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-323, + strand, RNAz p=0.50759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-323, + strand, RNAz p=0.50759

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-476, gnl|bosTau2|chr4 (2457972-2458472)
               

               
               3-476, gnl|Hg17|chr7 (94549465-94549977)
               

               
               3-476, gnl|Mm7|chr6 (5097351-5097795)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-476, gnl|bosTau2|chr4 (2457972-2458472)
               

               
               3-476, gnl|Hg17|chr7 (94549465-94549977)
               

               
               3-476, gnl|Mm7|chr6 (5097351-5097795)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.246184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)

	3-476, gnl\|bosTau2\|chr4 (2457972-2458472)
	3-476, gnl\|Hg17\|chr7 (94549465-94549977)
	3-476, gnl\|Mm7\|chr6 (5097351-5097795)