Non-Coding RNA Search

Ss1.1-rtra27_c21.5

Sequence:


               
               GCGGAAACGCGCGCGTGTCTGTGAAGTGGTGTGACTGTGTCGTGGGTGCGACTGGACTCT
TTGGGGGCAGGCGTAGACGTTTGTCCTCCACGAACCTTGCCTTCGTCAAAAGGGATGAAC
TTAGCTCCGCCAAGAAAGCCCAGGTCAGACGCCGACCTCCGCGTGCCTTGCCAGCCAGGG
TGCCCGAGCCCCCCTGCCCTCCAGGCGCCCGCAGGGGCCGTGTCCCAGACCCTGGGTCAC
CGGGCGGAGGGGTGTGACCTCAGGGTCCCGCACCTTGTCTCTGGTGTGCTTCGAAGGGTC
AGTCTTCCCTTGGTTTTAAAAATGACGTTTTTCTCATCTTTGTAGAAGGACGTTTCCCAG
GGCGGTTGGAATAAGAAAGGTGATGAAGCCATATGTACTTTCCTAGGCGTGTAGATGTCT
ACATAACTCATAGATTAACACAGAATATTCCCACTGCGAGTAGTATGATTCCTATTTAAA
GTGATTTATATTTGAGTAAAACGTTAAATTCTCTTTTTTGCTTTTTAAAAACCGGACGCG
TCCTATTTTCCTTTATATTATTCCACATATTTTTCCTTGAGGTTTTTGGCATGACACATC
CATTACTTAGTGTGCATCTCGGCACCAACACGTCTGCGTGCCTTGGCGTCTCGGCGGCAG
AGGCTCCGGGTGCGGCTTCCGTGGTGAGAGCGGCGTCGGGGGCCGCGGTGCTCCCGCAGG
GGCGTCAGCCTGCCGGGGCTGCGGTCTCGCCGTGCTCTTACTTAGGCTCTGACAGGCTCC
GTGTGGTGGGTTCTTTCTCAGGAACTCGGTTTAACTCTTATTTATTGATGTATCATTGCC
TTTGAAAAGCTTCTACTGGCACAATTTATTATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAAACGCGCGCGTGTCTGTGAAGTGGTGTGACTGTGTCGTGGGTGCGACTGGACTCT
TTGGGGGCAGGCGTAGACGTTTGTCCTCCACGAACCTTGCCTTCGTCAAAAGGGATGAAC
TTAGCTCCGCCAAGAAAGCCCAGGTCAGACGCCGACCTCCGCGTGCCTTGCCAGCCAGGG
TGCCCGAGCCCCCCTGCCCTCCAGGCGCCCGCAGGGGCCGTGTCCCAGACCCTGGGTCAC
CGGGCGGAGGGGTGTGACCTCAGGGTCCCGCACCTTGTCTCTGGTGTGCTTCGAAGGGTC
AGTCTTCCCTTGGTTTTAAAAATGACGTTTTTCTCATCTTTGTAGAAGGACGTTTCCCAG
GGCGGTTGGAATAAGAAAGGTGATGAAGCCATATGTACTTTCCTAGGCGTGTAGATGTCT
ACATAACTCATAGATTAACACAGAATATTCCCACTGCGAGTAGTATGATTCCTATTTAAA
GTGATTTATATTTGAGTAAAACGTTAAATTCTCTTTTTTGCTTTTTAAAAACCGGACGCG
TCCTATTTTCCTTTATATTATTCCACATATTTTTCCTTGAGGTTTTTGGCATGACACATC
CATTACTTAGTGTGCATCTCGGCACCAACACGTCTGCGTGCCTTGGCGTCTCGGCGGCAG
AGGCTCCGGGTGCGGCTTCCGTGGTGAGAGCGGCGTCGGGGGCCGCGGTGCTCCCGCAGG
GGCGTCAGCCTGCCGGGGCTGCGGTCTCGCCGTGCTCTTACTTAGGCTCTGACAGGCTCC
GTGTGGTGGGTTCTTTCTCAGGAACTCGGTTTAACTCTTATTTATTGATGTATCATTGCC
TTTGAAAAGCTTCTACTGGCACAATTTATTATTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr12 (19717426-19718302)
               

               
               1-876, gnl|Hg17|chr13 (20446186-20445189)
               

               
               1-876, gnl|Mm7|chr14 (52558523-52557596)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr12 (19717426-19718302)
               

               
               1-876, gnl|Hg17|chr13 (20446186-20445189)
               

               
               1-876, gnl|Mm7|chr14 (52558523-52557596)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               hea (0.204499)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1-876, gnl\|bosTau2\|chr12 (19717426-19718302)
	1-876, gnl\|Hg17\|chr13 (20446186-20445189)
	1-876, gnl\|Mm7\|chr14 (52558523-52557596)

	hea (0.204499)
	hyp (0.142837)
	nca (0.136874)
	ste (0.135208)
	tra (0.123092)
	pgl (0.118483)