Ss1.1-rtra27_d6.5
|
CTTCCCGGGAGCTGCCAGCGGAGGCCAGGAGGAGCGCGGCGCCGTGGGCGGGCGGGCGGA
CGAGCCGATCCGGGACGGGCTGCCGGCAGGCGGGAGACATGGACCGCGGCGAGCAAGGTC
TGCTGAGAACAGACCCGGTACCGGAGGAAGGAGAAGATGTTGCTGCCACGATCGGTGCCA
ATGAGCCCCTATCAGAGGAGGAGCGAGAAGAGCTGAGAAGAGAACTTACAAAGGTAGAAG
AAGAAATCCAGACCCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGCGGAGATCA
AGCGAAAACTTGGGATCAATTCACTACAGGAACTAAAACAGAACCTTGCCAAAGGGTGGC
AGGATGTGACGGCCACATCAGCATACAAGAAGACATCTGAAACTTTATCTCAGGCTGGAC
AGAAAGCTTCAGCTGCTTTTTCGTCTGTTGGATCAGTCATCACCAAAAAGCTGGAAGACG
TCAAAAACTCTCCGACTTTCAAATCATTTGAAGAAAAGGTTGAAAACTTAAAGTCTAAAG
TAGGGGGAAGCAAGCCTGCTGGCGGCGATTTTGGAGACGTCTTGAACTCCACTGCAAATG
CTAGTGCCACCACCACGGAGCCTCTTCCAGAACAGACACAGGAGAGCCTGTGAGAGTCCT
ACCTTTGTTCTGCTACTCACTGCCAGATGCTGCAAGCGAGATCCAAGCACATCTTGTCAA
CATTCATTGCCCTGAATTTCCACCAGATGTGCTTTTGTTGAGCTTTACATATTCCTTGAC
CAACTAGTTTGTGGGTGGAACCACGTAAAAAGATCCTTCACCTCTCTTCCTGGGAAACCC
CCTCTAATGTGCATTTAAGGCCCTTTATTTAGGAAGCATCATTATACAGACACGGGCAGT
ACCTGGGGAGCCTCACTAGAATGACCTAAGAAGCTGTGGGTTATTGTAATGGCTTTTCTA
CTTTACAAAATTGCTCTGGATCTGGGATACGGGATTGATCTTTTTCTTCTACCCTGTTTT
TGTTTTGTTTTGTTTTGTTTTCTCTTTGAATCTCTGTATATTTGATTCCTAACTAAGATT
GTTCTTTAAAACTTTTCTGGATCCTGGTTATTAAAAGTCTTGGCAAGATTTTCTTTACTT
GCAAGGGAAGAACTACCGGCTACAAAAAATATTTTTGAATAAACATTGTTTTGGTGTATC
TTACATCCTGGGTGTCTGAAGACACCAAACTAAATAAATCTGCTCTATATTCAATTTGTT
AAGAGTTTTGTGACAGTATGTACAGTAATTCAAAATCCTAGCGACTTGAGGGTGGAGCCC
TCACATCCTTGTTTATCACCATCTGTGACAGGAACCATTTCAGTGTGGTGGTTATTACGC
CACTTATAGCTACTTATTTTTTACCAGATTAAATTTTTAGTTTCAGAGTAAACTATAACG
TTCTGAATCAAGCATATTGCATTATCAATAGGTTGAAATATGAACACTCTCCTCAAATGT
TTGGTTCAAAAGCCTGAAAGATTTTTAGATCTAGGTCGCTGAAAAAAATGCTAAAATGAA
TCACATTGGGGGAACATCTTCATTTAATTCATTTAGCACCATTTAAAAGAAGCACACCAA
GTTATATGGCTAATATAACTTGAAACTCTTTTATACTAAGGGGTTGGTAATAACTCCTGG
GGATTTAATGCATTCATAAAAATCAGCTCATCATTTTCTACTTATTTGTGTTCCGTGTGT
TAGAAATAACAAATGATACCATAGACACTGCTCCCTGGTTTGAAAACGGAGTGTCAGGGC
TGAATGAACCAAAGCCTCTGGAGATATTTGCATGGAGGCCACGGTACTCTATTAATTCTC
ATAGCTACTTGCTCATCACCACTATCTTTTCCTTATGCTGTATATGGTTATGGCCTACAA
TGTTGTATTTGTTATTTATCAAGTTGTGATTGTTTTATCATTGTTTATGCCAAATGTTAA
ATGCCAAGCTTGGAATATCCTAAAGCATGACTAGATTTACCTTGGGATAAATTATCTTAT
GAAAACCAAATCTGAAAAGCCACAAGTGTTGATTGCTATAAAATAACATGCTGCAATTCT
TGATTGTTAGAGCTTTTGTTAGCACTTCAGATGCAACTGGAACTATGCTCAATGATATGT
GAAAAGCTTAATAAATTCTGTATATCAGTAAAAAAAAAAAAAAAAAAAATTATGAGGCCA
GTGGTCTGGAAACAGCTTTTTGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTCCCGGGAGCTGCCAGCGGAGGCCAGGAGGAGCGCGGCGCCGTGGGCGGGCGGGCGGA
CGAGCCGATCCGGGACGGGCTGCCGGCAGGCGGGAGACATGGACCGCGGCGAGCAAGGTC
TGCTGAGAACAGACCCGGTACCGGAGGAAGGAGAAGATGTTGCTGCCACGATCGGTGCCA
ATGAGCCCCTATCAGAGGAGGAGCGAGAAGAGCTGAGAAGAGAACTTACAAAGGTAGAAG
AAGAAATCCAGACCCTGTCTCAAGTGTTAGCAGCAAAAGAGAAGCATCTAGCGGAGATCA
AGCGAAAACTTGGGATCAATTCACTACAGGAACTAAAACAGAACCTTGCCAAAGGGTGGC
AGGATGTGACGGCCACATCAGCATACAAGAAGACATCTGAAACTTTATCTCAGGCTGGAC
AGAAAGCTTCAGCTGCTTTTTCGTCTGTTGGATCAGTCATCACCAAAAAGCTGGAAGACG
TCAAAAACTCTCCGACTTTCAAATCATTTGAAGAAAAGGTTGAAAACTTAAAGTCTAAAG
TAGGGGGAAGCAAGCCTGCTGGCGGCGATTTTGGAGACGTCTTGAACTCCACTGCAAATG
CTAGTGCCACCACCACGGAGCCTCTTCCAGAACAGACACAGGAGAGCCTGTGAGAGTCCT
ACCTTTGTTCTGCTACTCACTGCCAGATGCTGCAAGCGAGATCCAAGCACATCTTGTCAA
CATTCATTGCCCTGAATTTCCACCAGATGTGCTTTTGTTGAGCTTTACATATTCCTTGAC
CAACTAGTTTGTGGGTGGAACCACGTAAAAAGATCCTTCACCTCTCTTCCTGGGAAACCC
CCTCTAATGTGCATTTAAGGCCCTTTATTTAGGAAGCATCATTATACAGACACGGGCAGT
ACCTGGGGAGCCTCACTAGAATGACCTAAGAAGCTGTGGGTTATTGTAATGGCTTTTCTA
CTTTACAAAATTGCTCTGGATCTGGGATACGGGATTGATCTTTTTCTTCTACCCTGTTTT
TGTTTTGTTTTGTTTTGTTTTCTCTTTGAATCTCTGTATATTTGATTCCTAACTAAGATT
GTTCTTTAAAACTTTTCTGGATCCTGGTTATTAAAAGTCTTGGCAAGATTTTCTTTACTT
GCAAGGGAAGAACTACCGGCTACAAAAAATATTTTTGAATAAACATTGTTTTGGTGTATC
TTACATCCTGGGTGTCTGAAGACACCAAACTAAATAAATCTGCTCTATATTCAATTTGTT
AAGAGTTTTGTGACAGTATGTACAGTAATTCAAAATCCTAGCGACTTGAGGGTGGAGCCC
TCACATCCTTGTTTATCACCATCTGTGACAGGAACCATTTCAGTGTGGTGGTTATTACGC
CACTTATAGCTACTTATTTTTTACCAGATTAAATTTTTAGTTTCAGAGTAAACTATAACG
TTCTGAATCAAGCATATTGCATTATCAATAGGTTGAAATATGAACACTCTCCTCAAATGT
TTGGTTCAAAAGCCTGAAAGATTTTTAGATCTAGGTCGCTGAAAAAAATGCTAAAATGAA
TCACATTGGGGGAACATCTTCATTTAATTCATTTAGCACCATTTAAAAGAAGCACACCAA
GTTATATGGCTAATATAACTTGAAACTCTTTTATACTAAGGGGTTGGTAATAACTCCTGG
GGATTTAATGCATTCATAAAAATCAGCTCATCATTTTCTACTTATTTGTGTTCCGTGTGT
TAGAAATAACAAATGATACCATAGACACTGCTCCCTGGTTTGAAAACGGAGTGTCAGGGC
TGAATGAACCAAAGCCTCTGGAGATATTTGCATGGAGGCCACGGTACTCTATTAATTCTC
ATAGCTACTTGCTCATCACCACTATCTTTTCCTTATGCTGTATATGGTTATGGCCTACAA
TGTTGTATTTGTTATTTATCAAGTTGTGATTGTTTTATCATTGTTTATGCCAAATGTTAA
ATGCCAAGCTTGGAATATCCTAAAGCATGACTAGATTTACCTTGGGATAAATTATCTTAT
GAAAACCAAATCTGAAAAGCCACAAGTGTTGATTGCTATAAAATAACATGCTGCAATTCT
TGATTGTTAGAGCTTTTGTTAGCACTTCAGATGCAACTGGAACTATGCTCAATGATATGT
GAAAAGCTTAATAAATTCTGTATATCAGTAAAAAAAAAAAAAAAAAAAATTATGAGGCCA
GTGGTCTGGAAACAGCTTTTTGTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
232-385, gnl|bosTau2|chr14 (24515898-24515745) |
|
232-385, gnl|canFam2|chr29 (30439140-30439331) |
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232-385, gnl|danRer3|chr19 (41570771-41570941) |
|
232-385, gnl|dasNov1|scaffold_23150 (13774-13964) |
|
232-385, gnl|echTel1|scaffold_317000 (82927-82728) |
|
232-385, gnl|galGal2|chr2 (120254324-120254519) |
|
232-385, gnl|hg17|chr8 (81128060-81128251) |
|
232-385, gnl|Hg17|chr8 (81128222-81128069) |
|
232-385, gnl|loxAfr1|scaffold_8286 (52319-52510) |
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232-385, gnl|mm7|chr3 (8953967-8954158) |
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232-385, gnl|Mm7|chr3 (8954129-8953976) |
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232-385, gnl|monDom2|scaffold_4 (77969913-77969730) |
|
232-385, gnl|oryCun1|scaffold_187242 (17977-18169) |
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232-385, gnl|panTro1|chr7 (83255362-83255553) |
|
232-385, gnl|rheMac2|chr8 (82477937-82478127) |
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232-385, gnl|rn3|chr2 (94812746-94812555) |
|
232-385, gnl|tetNig1|chr21_random (1585835-1585989) |
|
232-385, gnl|xenTro1|scaffold_205 (987051-987242) |
| |
|
520-2244, gnl|bosTau2|chr14 (24497178-24495451) |
|
520-2244, gnl|Hg17|chr8 (81113043-81111326) |
|
520-2244, gnl|Mm7|chr3 (8937626-8935978) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
232-385, gnl|bosTau2|chr14 (24515898-24515745) |
|
232-385, gnl|canFam2|chr29 (30439140-30439331) |
|
232-385, gnl|danRer3|chr19 (41570771-41570941) |
|
232-385, gnl|dasNov1|scaffold_23150 (13774-13964) |
|
232-385, gnl|echTel1|scaffold_317000 (82927-82728) |
|
232-385, gnl|galGal2|chr2 (120254324-120254519) |
|
232-385, gnl|hg17|chr8 (81128060-81128251) |
|
232-385, gnl|Hg17|chr8 (81128222-81128069) |
|
232-385, gnl|loxAfr1|scaffold_8286 (52319-52510) |
|
232-385, gnl|mm7|chr3 (8953967-8954158) |
|
232-385, gnl|Mm7|chr3 (8954129-8953976) |
|
232-385, gnl|monDom2|scaffold_4 (77969913-77969730) |
|
232-385, gnl|oryCun1|scaffold_187242 (17977-18169) |
|
232-385, gnl|panTro1|chr7 (83255362-83255553) |
|
232-385, gnl|rheMac2|chr8 (82477937-82478127) |
|
232-385, gnl|rn3|chr2 (94812746-94812555) |
|
232-385, gnl|tetNig1|chr21_random (1585835-1585989) |
|
232-385, gnl|xenTro1|scaffold_205 (987051-987242) |
| |
|
520-2244, gnl|bosTau2|chr14 (24497178-24495451) |
|
520-2244, gnl|Hg17|chr8 (81113043-81111326) |
|
520-2244, gnl|Mm7|chr3 (8937626-8935978) |
|
cbe (1.67464) |
|
fco (0.943248) |
|
rec (0.865351) |
|
spc (0.793561) |
|
lin (0.728014) |
|
pan (0.707881) |
|
tra (0.61546) |
|
sin (0.524843) |
|
pro (0.512033) |
|
pgl (0.35545) |
|
gul (0.355177) |
|
cki (0.330469) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
lnt (0.284616) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
thg (0.253582) |
|
clu (0.239292) |
|
nms (0.213858) |
|
mas (0.210305) |
|
cty (0.20816) |
|
ton (0.1755) |
|
nje (0.16592) |
|
nco (0.161734) |
|
liv (0.146284) |
|
spl (0.143184) |
|
kid (0.129735) |
|
ova (0.129132) |
|
cbl (0.114797) |
|
eje (0.0988338) |
|
cbe (1.67464) |
|
fco (0.943248) |
|
rec (0.865351) |
|
spc (0.793561) |
|
lin (0.728014) |
|
pan (0.707881) |
|
tra (0.61546) |
|
sin (0.524843) |
|
pro (0.512033) |
|
pgl (0.35545) |
|
gul (0.355177) |
|
cki (0.330469) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
lnt (0.284616) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
thg (0.253582) |
|
clu (0.239292) |
|
nms (0.213858) |
|
mas (0.210305) |
|
cty (0.20816) |
|
ton (0.1755) |
|
nje (0.16592) |
|
nco (0.161734) |
|
liv (0.146284) |
|
spl (0.143184) |
|
kid (0.129735) |
|
ova (0.129132) |
|
cbl (0.114797) |
|
eje (0.0988338) |
