Non-Coding RNA Search

Ss1.1-rtra27_f21.5

Sequence:


               
               GTGACCCAAGCCACTGCAGTGACAATGCCAGGTCCTTCAACTGCTGAGCCACACGAGAAC
TCCTCCCTGCAATTTTTAACTGGAACATTTTAAGGTGAATAAAAACTGCACAGTTTACAC
CAAATAAACGTAACATTTTTGGTACTTAGTGAACTTCCTTTTAGAGTAGCTGATAATTAC
TTCCATAGACTGAGTACCAGCTACACTCCATCATGTCCCTTAAGCTTCACGATAACCATT
CAAAACTCCTTTGACAAAACAGTTTTCTTCTTATTTAACTCTTTTTCCAAAATTGGCAAT
AGTGTCATCAGGATCCCCAATACCCTGCAAAATACCTGGTACATAGTAGACACATAAAAT
TCGATGTAGGTAGAGCATGCTACAATTTGGGTGCTAAGTGGAAGGAGTAATTGCATCATC
ACACACACACACTTTGATAAATGGATGTTTCATTATATGGATGTGCAAAAAAATTCCAGG
TTTTTTTTTTGGCGGGGGGGAGTGGAGGGATTAGTGACGACCTCAAGGATTAAAGCTGCC
TTCCCCCTTCATAGAGGCCAAGAAAGAGGTTATTAGTGAAAAGTTAATTATGGATTTGGC
GTTAGAAATTGTGCTCTGTTGAGACGTATCTGAGCACCCTCATCTCAGCTCTTTGTTTTA
ATCCCTCTTGTGGGCTAATGTGAGGGTAATCGTACAGATATTATAGGAACTTCTTTTCTT
TCTTTCTCAACCTTTATGAAAACAATGCATAGTAAAATATATCTAGAAAACTTTTCTGTT
TGAGACTCTTCTTTTAATGGGCTTTTTATTCTAATGATAATTGTACCTTTATCTTTCAAA
AGCTGATATTTCCTACTAAAGCATCTCCCCCCCAGAAATATCTCATTAAGAAGCCCACAA
AAAGAATAGAGGAGAAGAAAGCCTTAGGTATCAATTCCAAAACAGTGATTGAAATCTTCC
CAAATAATTATAGCTTGTATCATCTGCAGAGGTGGTTTGGCTTGTCTTACCCCATAATCT
AATTTCAGGGGGAAAAAAAGCTTTATTTTAACACTCATCTAAATCAACACTAAAACCTTT
TGTCTCGAAGGGCTTATTGAGAAACTCAAATGAATATACTTTCTGAATTAATGTTATCAA
AAATGTATAGCTTCCTGTGCGCCTTGTGTCAGGCTACATCCACCCTCCAAAGTACGCTCT
TCCCTCTCCTCCTGTGGTTTCATTTAAGCCGGGCAGGTTAGAGACAGCATCTCAGACCTT
ACAATCAAATGACAAAGAAGGTAATTGCACTCTTTAAGGAATACTGACAAGTGGTTTCTG
TTTTCTAAAGGACAAAATAAAGAGGATGTCTTGTTTTTAATTAGGCTCTTTACCCTGTTG
TGTTGGAAATTCCGGTGCAATACTGTTGACCACAACTGCCAAATCTGAAAGCCCAAAGGA
AGAAGTAAAGCTTTATGCTAATTGTATTGCAGCATGATGGGATTTTTAATCTTTGTATGT
CCTTTTTTAGATAACTCTGCTAGCAGACTCTTAACTGCAATGTACATATAGGAAAATATA
GAAGAAAGAAAACTATTTTCTTTATCCCCTTACAAGGTACCTGAAAACTTTAAGTGAAAA
AGATTTCTATGTTTAAAATTGCCTTTTTTATCTCAATACATTTATGGAAAAATATTAAAC
AGCCTGAATATCTTATAATTTTGTAGAAAAAATATGCATCTATTTTTTTCTTGCCTTGTT
TTTATATAGCAATAAAAGTTATTTTGGAAGCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCCAAGCCACTGCAGTGACAATGCCAGGTCCTTCAACTGCTGAGCCACACGAGAAC
TCCTCCCTGCAATTTTTAACTGGAACATTTTAAGGTGAATAAAAACTGCACAGTTTACAC
CAAATAAACGTAACATTTTTGGTACTTAGTGAACTTCCTTTTAGAGTAGCTGATAATTAC
TTCCATAGACTGAGTACCAGCTACACTCCATCATGTCCCTTAAGCTTCACGATAACCATT
CAAAACTCCTTTGACAAAACAGTTTTCTTCTTATTTAACTCTTTTTCCAAAATTGGCAAT
AGTGTCATCAGGATCCCCAATACCCTGCAAAATACCTGGTACATAGTAGACACATAAAAT
TCGATGTAGGTAGAGCATGCTACAATTTGGGTGCTAAGTGGAAGGAGTAATTGCATCATC
ACACACACACACTTTGATAAATGGATGTTTCATTATATGGATGTGCAAAAAAATTCCAGG
TTTTTTTTTTGGCGGGGGGGAGTGGAGGGATTAGTGACGACCTCAAGGATTAAAGCTGCC
TTCCCCCTTCATAGAGGCCAAGAAAGAGGTTATTAGTGAAAAGTTAATTATGGATTTGGC
GTTAGAAATTGTGCTCTGTTGAGACGTATCTGAGCACCCTCATCTCAGCTCTTTGTTTTA
ATCCCTCTTGTGGGCTAATGTGAGGGTAATCGTACAGATATTATAGGAACTTCTTTTCTT
TCTTTCTCAACCTTTATGAAAACAATGCATAGTAAAATATATCTAGAAAACTTTTCTGTT
TGAGACTCTTCTTTTAATGGGCTTTTTATTCTAATGATAATTGTACCTTTATCTTTCAAA
AGCTGATATTTCCTACTAAAGCATCTCCCCCCCAGAAATATCTCATTAAGAAGCCCACAA
AAAGAATAGAGGAGAAGAAAGCCTTAGGTATCAATTCCAAAACAGTGATTGAAATCTTCC
CAAATAATTATAGCTTGTATCATCTGCAGAGGTGGTTTGGCTTGTCTTACCCCATAATCT
AATTTCAGGGGGAAAAAAAGCTTTATTTTAACACTCATCTAAATCAACACTAAAACCTTT
TGTCTCGAAGGGCTTATTGAGAAACTCAAATGAATATACTTTCTGAATTAATGTTATCAA
AAATGTATAGCTTCCTGTGCGCCTTGTGTCAGGCTACATCCACCCTCCAAAGTACGCTCT
TCCCTCTCCTCCTGTGGTTTCATTTAAGCCGGGCAGGTTAGAGACAGCATCTCAGACCTT
ACAATCAAATGACAAAGAAGGTAATTGCACTCTTTAAGGAATACTGACAAGTGGTTTCTG
TTTTCTAAAGGACAAAATAAAGAGGATGTCTTGTTTTTAATTAGGCTCTTTACCCTGTTG
TGTTGGAAATTCCGGTGCAATACTGTTGACCACAACTGCCAAATCTGAAAGCCCAAAGGA
AGAAGTAAAGCTTTATGCTAATTGTATTGCAGCATGATGGGATTTTTAATCTTTGTATGT
CCTTTTTTAGATAACTCTGCTAGCAGACTCTTAACTGCAATGTACATATAGGAAAATATA
GAAGAAAGAAAACTATTTTCTTTATCCCCTTACAAGGTACCTGAAAACTTTAAGTGAAAA
AGATTTCTATGTTTAAAATTGCCTTTTTTATCTCAATACATTTATGGAAAAATATTAAAC
AGCCTGAATATCTTATAATTTTGTAGAAAAAATATGCATCTATTTTTTTCTTGCCTTGTT
TTTATATAGCAATAAAAGTTATTTTGGAAGCTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               608-725, - strand, RNAz p=0.803251
               

               
               846-964, - strand, RNAz p=0.866913

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               608-725, - strand, RNAz p=0.803251
               

               
               846-964, - strand, RNAz p=0.866913

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-1773, gnl|bosTau2|chr2 (13642163-13640524)
               

               
               110-1773, gnl|Hg17|chr2 (172238509-172240150)
               

               
               110-1773, gnl|Mm7|chr2 (70984951-70986624)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-1773, gnl|bosTau2|chr2 (13642163-13640524)
               

               
               110-1773, gnl|Hg17|chr2 (172238509-172240150)
               

               
               110-1773, gnl|Mm7|chr2 (70984951-70986624)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               ski (1.76082)
               

               
               fat (1.32685)
               

               
               tra (1.10783)
               

               
               duo (0.864006)
               

               
               ova (0.645661)
               

               
               mga (0.64082)
               

               
               sug (0.636456)
               

               
               csk (0.562984)
               

               
               cty (0.5204)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               spc (0.340097)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (1.76082)
               

               
               fat (1.32685)
               

               
               tra (1.10783)
               

               
               duo (0.864006)
               

               
               ova (0.645661)
               

               
               mga (0.64082)
               

               
               sug (0.636456)
               

               
               csk (0.562984)
               

               
               cty (0.5204)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               mgp (0.461361)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               spc (0.340097)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	608-725, - strand, RNAz p=0.803251
	846-964, - strand, RNAz p=0.866913

	110-1773, gnl\|bosTau2\|chr2 (13642163-13640524)
	110-1773, gnl\|Hg17\|chr2 (172238509-172240150)
	110-1773, gnl\|Mm7\|chr2 (70984951-70986624)

	ski (1.76082)
	fat (1.32685)
	tra (1.10783)
	duo (0.864006)
	ova (0.645661)
	mga (0.64082)
	sug (0.636456)
	csk (0.562984)
	cty (0.5204)
	ret (0.514933)
	pro (0.512033)
	mgp (0.461361)
	thg (0.380373)
	rec (0.346141)
	cbl (0.344392)
	spc (0.340097)
	lin (0.291206)
	spl (0.286369)
	eru (0.240096)
	mas (0.210305)
	hea (0.204499)
	nbm (0.198649)
	mcp (0.170648)
	liv (0.146284)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	jca (0.11396)
	eje (0.0988338)