Non-Coding RNA Search

Ss1.1-rtra27_n23.5

Sequence:


               
               TTTTAAGACCTTTGGGTGAAAAGAAGCCCAAAACATGAGCTGTGTGTAACAGAGCCGAAT
GTTATGATGCTAGGTTTTAAAAGTTTGTTTATTTAAGACAAGAAGTTCCGTTCTAACCAG
ATGTTTCAGCGACGTTGCCAAATCAGCAGTGTGGTGAACAGGCGACACTTGTCACACCAT
TTGAGGCTCAGCCTCCACCAGTGCAGGTGTGAGGGTGGCTTGTTCCATGGGAGGTGCTAA
GCTCCAGGGTAAACAGACTGCAGAATGGTAGATTGTCTTCAGCAGTGTCATTTCTGTTTA
TGAATATGATTTTCCCCTCATTTCATGTTAGATTGAAAATGCAAACAAACTGCTTTCAAG
AACACCCAGACGCTTGTCTGTGTTACGGGGTGTGTTGTAAACACGAATTTTCATAGGTGC
TTCCTTCAAATATACGTCCATTGTGGTGATGAAGAGGTACTGGACTCTCTCAGGCTCTTT
CCTTGCCAGTTGTCTCCTGCAGTTAATGGAAATATATATTTTATTTTAGAATATAATTTA
AACATGAAGGTCTATTCTTTGCACTTTTTATTAATATATATATAGAGATAATCTTTAAAA
AAAATTAAAAATTCAAGTCCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAGACCTTTGGGTGAAAAGAAGCCCAAAACATGAGCTGTGTGTAACAGAGCCGAAT
GTTATGATGCTAGGTTTTAAAAGTTTGTTTATTTAAGACAAGAAGTTCCGTTCTAACCAG
ATGTTTCAGCGACGTTGCCAAATCAGCAGTGTGGTGAACAGGCGACACTTGTCACACCAT
TTGAGGCTCAGCCTCCACCAGTGCAGGTGTGAGGGTGGCTTGTTCCATGGGAGGTGCTAA
GCTCCAGGGTAAACAGACTGCAGAATGGTAGATTGTCTTCAGCAGTGTCATTTCTGTTTA
TGAATATGATTTTCCCCTCATTTCATGTTAGATTGAAAATGCAAACAAACTGCTTTCAAG
AACACCCAGACGCTTGTCTGTGTTACGGGGTGTGTTGTAAACACGAATTTTCATAGGTGC
TTCCTTCAAATATACGTCCATTGTGGTGATGAAGAGGTACTGGACTCTCTCAGGCTCTTT
CCTTGCCAGTTGTCTCCTGCAGTTAATGGAAATATATATTTTATTTTAGAATATAATTTA
AACATGAAGGTCTATTCTTTGCACTTTTTATTAATATATATATAGAGATAATCTTTAAAA
AAAATTAAAAATTCAAGTCCAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-621, gnl|bosTau2|chr15 (16359927-16360584)
               

               
               2-621, gnl|Hg17|chr11 (120466033-120466690)
               

               
               2-621, gnl|Mm7|chr9 (42347334-42346690)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-621, gnl|bosTau2|chr15 (16359927-16360584)
               

               
               2-621, gnl|Hg17|chr11 (120466033-120466690)
               

               
               2-621, gnl|Mm7|chr9 (42347334-42346690)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               thg (0.380373)
               

               
               nca (0.273748)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               nca (0.273748)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	2-621, gnl\|bosTau2\|chr15 (16359927-16360584)
	2-621, gnl\|Hg17\|chr11 (120466033-120466690)
	2-621, gnl\|Mm7\|chr9 (42347334-42346690)

	thg (0.380373)
	nca (0.273748)
	cmu (0.186393)
	gul (0.177588)
	fco (0.157208)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)