Non-Coding RNA Search

Ss1.1-rtra27_o7.5

Sequence:


               
               GTTACTTCTAATTTATATTATTCACGGGTGTCTGTCTTCCTCTCTCTCTCTCACCACACA
CACAATATTCATACTAACAAGTTTGGTGTATGTTCTCCTGTAGGGAAGACTTTGGCTTCA
TTTAACTAAAAAGATTTTGTTGTTGTTGTCATTGCCAAAGAGATACAAAATAATTTTGCT
TTCCCAGCTTGATTTGTGGCCTCTCTCTCTTAGCCTTTTCTCCTTTTTAAAAAACTAATT
GCTGTATTATAAATTTCAGCCTTTTTTTTAAGCCAACTCTTTGCTCTAATTTTAATGACT
TTTGGGGAAAAAATGGAAATGTGAAGGGTGTGAACTCCATTGTATGTGGTTTTGTGTGAA
AGTTGCACAGTCTGGTTTTTCCTAAACTGATTTTTTTCCCCCGCATTTGGTGGATTTTTT
TTTAATTATTATTATTCAAAAACATAACTGAGTTTTTTAAAAAGAAAATTTATATCTGGG
TTAAGTGTTTATCATATATATGGGTACTTTGTAATATCTAAAAACCGAGAAACGGAAATG
GAATCCTGCTCACAAAATCACTTTAAGATGTTTTTTTAAGCTGTTAATCTTCTCTTTCCT
GGTGTCGCTGACACTGCAGAATTGTACAGAACTCCCACGGGCCTGTACTAACCCCACTCA
AGGTCTCTCTCTGTTGGCTTTTTGCTTTGGGGCTATGCCATAGGCATCGCAAACAATCCA
AAAAGTGGAATCATCAAGTGGGAGCATTGCGAGCTGTCTTCTCATGTTCTATATGTATTA
TGTATGTATGTATGTATTATTATTACTGCCAAGAGGGTCTGATGGCACATCATGGGGGGA
GGGCAGATCTAAGGGAGGGAAGTGCTTGAACTCTTCTTAAGGTTTTGTGGCCAGCCCTTC
AAGTGCACTGAGCTATGTGACTCTGACGGCCTTTCACGCGGCACATTTGGATATTTCCAG
AACCACCATGAGATGGGTTGGATGGGAATTCATTCATGCGCGAAAGTGAGGATTCAGGAA
TAGGGTGGCGGTCCAGTCCACGTCCTCCCAGCTCGCCCGCCCCCGTGGAGCTGGGCTGAC
AGGCTGTGGGAAGGGGCCGCTGGTCCTGAGCAGCCTCACCCCCGCGCTGCTTCCTCAGCT
GGCCATCACATCACCCCCACAAGGCAGAGGTGCGGTGAGCAGGCCTCCGGGGACAGCCCT
TGGCCCTCCTCGAGGTCTGTCTGTCACCAGAAGTGACTCGTACAGGTAGGAAGCACTGAA
AACACAGAGTGTTCTTAGAGCGCCATGCAACTCACCAGGTAAGAGGGACGTTTGAAGTAC
CAATCACGTGGCGCTTTTCTGTCTCGGGTACAGGGAAGAAGCTTCTAGAAACACACAAAG
CAACACACAGCAAGCTAAGAATTTGGAAAGCCCGGATGGACTTACTGCCAAAAATGAAAC
AATAAAATTTAAATTTCAAAAGAAAAATTACTTAGTCACTGTGTTGCCCAAATCTTACTT
CGGCACCACCCCTCTGCCCACGCACGGCAGCCGAACTTGAAGGGTTACTGGCGTGCAAGC
GCTGGTGTTTGATCTCCTGTGTGTGTTTTGCCTCAGCATTAAGGGCATTTTACCCTTGCA
GTTTTACTAAAACACTCTGAAAAAAATATTCCGAGCTTCATATTAACCTTATCTGTCAAC
GTAATGATTTCATGAACATTATCATATTGTCAAATTCCTACTGACAACATTATTAGTCTA
CGGGAGCTTAACTTTATAAGGAAATGTATTTTGACACTGATATCTTATTAAAGTATTCTG
ACCCTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACTTCTAATTTATATTATTCACGGGTGTCTGTCTTCCTCTCTCTCTCTCACCACACA
CACAATATTCATACTAACAAGTTTGGTGTATGTTCTCCTGTAGGGAAGACTTTGGCTTCA
TTTAACTAAAAAGATTTTGTTGTTGTTGTCATTGCCAAAGAGATACAAAATAATTTTGCT
TTCCCAGCTTGATTTGTGGCCTCTCTCTCTTAGCCTTTTCTCCTTTTTAAAAAACTAATT
GCTGTATTATAAATTTCAGCCTTTTTTTTAAGCCAACTCTTTGCTCTAATTTTAATGACT
TTTGGGGAAAAAATGGAAATGTGAAGGGTGTGAACTCCATTGTATGTGGTTTTGTGTGAA
AGTTGCACAGTCTGGTTTTTCCTAAACTGATTTTTTTCCCCCGCATTTGGTGGATTTTTT
TTTAATTATTATTATTCAAAAACATAACTGAGTTTTTTAAAAAGAAAATTTATATCTGGG
TTAAGTGTTTATCATATATATGGGTACTTTGTAATATCTAAAAACCGAGAAACGGAAATG
GAATCCTGCTCACAAAATCACTTTAAGATGTTTTTTTAAGCTGTTAATCTTCTCTTTCCT
GGTGTCGCTGACACTGCAGAATTGTACAGAACTCCCACGGGCCTGTACTAACCCCACTCA
AGGTCTCTCTCTGTTGGCTTTTTGCTTTGGGGCTATGCCATAGGCATCGCAAACAATCCA
AAAAGTGGAATCATCAAGTGGGAGCATTGCGAGCTGTCTTCTCATGTTCTATATGTATTA
TGTATGTATGTATGTATTATTATTACTGCCAAGAGGGTCTGATGGCACATCATGGGGGGA
GGGCAGATCTAAGGGAGGGAAGTGCTTGAACTCTTCTTAAGGTTTTGTGGCCAGCCCTTC
AAGTGCACTGAGCTATGTGACTCTGACGGCCTTTCACGCGGCACATTTGGATATTTCCAG
AACCACCATGAGATGGGTTGGATGGGAATTCATTCATGCGCGAAAGTGAGGATTCAGGAA
TAGGGTGGCGGTCCAGTCCACGTCCTCCCAGCTCGCCCGCCCCCGTGGAGCTGGGCTGAC
AGGCTGTGGGAAGGGGCCGCTGGTCCTGAGCAGCCTCACCCCCGCGCTGCTTCCTCAGCT
GGCCATCACATCACCCCCACAAGGCAGAGGTGCGGTGAGCAGGCCTCCGGGGACAGCCCT
TGGCCCTCCTCGAGGTCTGTCTGTCACCAGAAGTGACTCGTACAGGTAGGAAGCACTGAA
AACACAGAGTGTTCTTAGAGCGCCATGCAACTCACCAGGTAAGAGGGACGTTTGAAGTAC
CAATCACGTGGCGCTTTTCTGTCTCGGGTACAGGGAAGAAGCTTCTAGAAACACACAAAG
CAACACACAGCAAGCTAAGAATTTGGAAAGCCCGGATGGACTTACTGCCAAAAATGAAAC
AATAAAATTTAAATTTCAAAAGAAAAATTACTTAGTCACTGTGTTGCCCAAATCTTACTT
CGGCACCACCCCTCTGCCCACGCACGGCAGCCGAACTTGAAGGGTTACTGGCGTGCAAGC
GCTGGTGTTTGATCTCCTGTGTGTGTTTTGCCTCAGCATTAAGGGCATTTTACCCTTGCA
GTTTTACTAAAACACTCTGAAAAAAATATTCCGAGCTTCATATTAACCTTATCTGTCAAC
GTAATGATTTCATGAACATTATCATATTGTCAAATTCCTACTGACAACATTATTAGTCTA
CGGGAGCTTAACTTTATAAGGAAATGTATTTTGACACTGATATCTTATTAAAGTATTCTG
ACCCTAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               45-1806, gnl|bosTau2|chr11 (23284263-23282487)
               

               
               45-1806, gnl|Hg17|chr2 (46523741-46525487)
               

               
               45-1806, gnl|Mm7|chr17 (85133856-85135852)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1806, gnl|bosTau2|chr11 (23284263-23282487)
               

               
               45-1806, gnl|Hg17|chr2 (46523741-46525487)
               

               
               45-1806, gnl|Mm7|chr17 (85133856-85135852)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

Help | Less info


               
               cmu (1.86393)
               

               
               pro (1.5361)
               

               
               bla (0.746083)
               

               
               pla (0.66836)
               

               
               hea (0.613497)
               

               
               clu (0.598229)
               

               
               aor (0.585823)
               

               
               cut (0.509771)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               lnt (0.426925)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               csp (0.322373)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               jej (0.0989218)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (1.86393)
               

               
               pro (1.5361)
               

               
               bla (0.746083)
               

               
               pla (0.66836)
               

               
               hea (0.613497)
               

               
               clu (0.598229)
               

               
               aor (0.585823)
               

               
               cut (0.509771)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               lnt (0.426925)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               csp (0.322373)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               jej (0.0989218)

	45-1806, gnl\|bosTau2\|chr11 (23284263-23282487)
	45-1806, gnl\|Hg17\|chr2 (46523741-46525487)
	45-1806, gnl\|Mm7\|chr17 (85133856-85135852)

	cmu (1.86393)
	pro (1.5361)
	bla (0.746083)
	pla (0.66836)
	hea (0.613497)
	clu (0.598229)
	aor (0.585823)
	cut (0.509771)
	sug (0.509165)
	cki (0.495704)
	lnt (0.426925)
	cst (0.420109)
	amn (0.417711)
	ova (0.387397)
	tra (0.369276)
	rec (0.346141)
	spc (0.340097)
	vin (0.332557)
	csp (0.322373)
	lun (0.300978)
	fat (0.294855)
	ski (0.29347)
	liv (0.292569)
	spl (0.286369)
	hyp (0.285673)
	hlv (0.278513)
	che (0.272628)
	nmm (0.265604)
	cly (0.241284)
	cbe (0.239234)
	jca (0.22792)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	tbr (0.154178)
	cag (0.151194)
	isp (0.150376)
	ssp (0.13552)
	lyg (0.133103)
	jej (0.0989218)