Non-Coding RNA Search

Ss1.1-rtra28_f23.5

Sequence:


               
               TTTAAAAAATCTGTGAAATTAACATGCTTGTGTATAGCTTTCTAATATATATAATATTAT
GGTAATAGCAGAAGTTTTGTTATCTTAATAGCGGGAGGGGGGTATATTTGTGCAGTTGCA
CATTTGAGTAACTATTTTCTTTCTGTTTTCTTTTACTCTGCATACATTTTATAAGTTCAA
GGTCAGCTGTCAAAAGGATAACCTGTGGGATTAGAACATATCACATTGCAACACCATAAA
TTGTTTTTAATCCATTAGCAATCCATTGGGTCAACTGACATCCATTGTATATACTAATTA
GTTTCTTTCATGCTATTTTTTGTTTTTGCATTTTTACCAAATGCAGGGCCCCTTTCTGAT
CTCACCATTTCACCAGGCATCTTGGAATTCAGTAAGTGCATACCCTAAACTTGCCCATAT
CCTAAATTATCTGGTTGGTTTTCAGCCTAGAATTTGAAAATGCTTTCAAGAAATATGCCC
AGAATAGAAAGCTCAGTTGGGGCACAGGTCCTGCCAGCATAGCCCTAGAAACAAGTGATA
TGGAGTTTACTTGATGTATGAGTTATAAATTCCCACAGAAGAAAAATGTGAAAGACTGGG
TGCTAGATAAGAAGGAAACAGGTAAAGGGATAGTTGCTTCATCATCCGTTTTTAATTATT
TTAACTGACCCTCAACAATCTTGTCAGCAATATAGGACTGTTGAACAATCCCGGTGTGTC
AGGACCCCCAAATGTCACTTCTGCATAAAGCATGTATGTCGTCTATTTTTTTTCTTCAAT
AAAGAGATTTAATAGCCATTTCAAGAAATCCCATTAAAGAACCTCTCTATGTCCCTGTTT
TTTTTTAATTTTTCAAGAAACAGTGATGACTTGTCTAATATTCGTCTATAAGGGATTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAAAATCTGTGAAATTAACATGCTTGTGTATAGCTTTCTAATATATATAATATTAT
GGTAATAGCAGAAGTTTTGTTATCTTAATAGCGGGAGGGGGGTATATTTGTGCAGTTGCA
CATTTGAGTAACTATTTTCTTTCTGTTTTCTTTTACTCTGCATACATTTTATAAGTTCAA
GGTCAGCTGTCAAAAGGATAACCTGTGGGATTAGAACATATCACATTGCAACACCATAAA
TTGTTTTTAATCCATTAGCAATCCATTGGGTCAACTGACATCCATTGTATATACTAATTA
GTTTCTTTCATGCTATTTTTTGTTTTTGCATTTTTACCAAATGCAGGGCCCCTTTCTGAT
CTCACCATTTCACCAGGCATCTTGGAATTCAGTAAGTGCATACCCTAAACTTGCCCATAT
CCTAAATTATCTGGTTGGTTTTCAGCCTAGAATTTGAAAATGCTTTCAAGAAATATGCCC
AGAATAGAAAGCTCAGTTGGGGCACAGGTCCTGCCAGCATAGCCCTAGAAACAAGTGATA
TGGAGTTTACTTGATGTATGAGTTATAAATTCCCACAGAAGAAAAATGTGAAAGACTGGG
TGCTAGATAAGAAGGAAACAGGTAAAGGGATAGTTGCTTCATCATCCGTTTTTAATTATT
TTAACTGACCCTCAACAATCTTGTCAGCAATATAGGACTGTTGAACAATCCCGGTGTGTC
AGGACCCCCAAATGTCACTTCTGCATAAAGCATGTATGTCGTCTATTTTTTTTCTTCAAT
AAAGAGATTTAATAGCCATTTCAAGAAATCCCATTAAAGAACCTCTCTATGTCCCTGTTT
TTTTTTAATTTTTCAAGAAACAGTGATGACTTGTCTAATATTCGTCTATAAGGGATTAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               802-898, - strand, RNAz p=0.786035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               802-898, - strand, RNAz p=0.786035

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-898, gnl|bosTau2|chr7 (56592759-56593657)
               

               
               1-898, gnl|Hg17|chr5 (88053213-88052327)
               

               
               1-898, gnl|Mm7|chr13 (80738600-80739532)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-898, gnl|bosTau2|chr7 (56592759-56593657)
               

               
               1-898, gnl|Hg17|chr5 (88053213-88052327)
               

               
               1-898, gnl|Mm7|chr13 (80738600-80739532)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               tra (0.369276)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               lnt (0.284616)
               

               
               ese (0.253004)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               lnt (0.284616)
               

               
               ese (0.253004)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-898, gnl\|bosTau2\|chr7 (56592759-56593657)
	1-898, gnl\|Hg17\|chr5 (88053213-88052327)
	1-898, gnl\|Mm7\|chr13 (80738600-80739532)

	tra (0.369276)
	vin (0.332557)
	bfe (0.299715)
	lnt (0.284616)
	ese (0.253004)
	gul (0.177588)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	ssp (0.13552)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)
	nbm (0.0993246)