Non-Coding RNA Search

Ss1.1-rtra29_c1.5

Sequence:


               
               AGAGGGAGAATTTTAAAAAGATTATTTGAATTACGACATGAAATTGAAATATTTTTAAAT
CAAAAGCACTCAGATTTGGCTGAATATTTTTTTGATGAGGAATGGGTTGCAAAGTTGGCC
TATTTATCAGATATTTTTTCACTTATAAATGAACTAAACTTAAGTCTCCAAGGAACTATG
ACCACTCTCTTCAGTTTGTATAATAAAATTGATATGCTTAAGGAAAAGTTAAAAATGTGG
TTGAAGCGCACACAAGAGAATGATTATGATATGTTCCCTTCATTTTCTGAATTTTCAAAC
TCATCAGGCTTAAATATGAGAAGTATTTCAAGCATTATTTTTGAACACCTCGAAGGACTT
TCTCAAATGTTCAATGACTGTTACCTACCTGAAGAAGACTTGCGTTCAGGAAATTTGTGG
ATAATTAATCCTTTTATGAACCATCAAAATAGTAATCTCACGGACTTTGAAGAAGAAAAA
CTAGCACAGTTATCTTCAGATTTAGGATTACAATCAATATTTAAATCAATGTCTGTAACT
CAGTTTTGGATAAATGCAAAGGCAAGTTACCCAGAACTCCATGAAAAGGCAATGAAATTT
TTATTGCCTTTTTCAACTATTTATTTATGTGATGCTACATTTTCAGCTTTGACTGAGTTA
AAGCAAAGAAATCTGTTGGTTTCTGGCCCTGCCCTACGACTTGCAGTCACGTCTTTAATT
CCGAGAATAGAGAAATTAGTCAAGGAAAAAGAATAGTAATGTGCATATTGCTTATTATCA
AAGTCTATAATTTTGTGTTAAATTTTGTATGAGATAAATATCCTAAAATATAATTTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGGAGAATTTTAAAAAGATTATTTGAATTACGACATGAAATTGAAATATTTTTAAAT
CAAAAGCACTCAGATTTGGCTGAATATTTTTTTGATGAGGAATGGGTTGCAAAGTTGGCC
TATTTATCAGATATTTTTTCACTTATAAATGAACTAAACTTAAGTCTCCAAGGAACTATG
ACCACTCTCTTCAGTTTGTATAATAAAATTGATATGCTTAAGGAAAAGTTAAAAATGTGG
TTGAAGCGCACACAAGAGAATGATTATGATATGTTCCCTTCATTTTCTGAATTTTCAAAC
TCATCAGGCTTAAATATGAGAAGTATTTCAAGCATTATTTTTGAACACCTCGAAGGACTT
TCTCAAATGTTCAATGACTGTTACCTACCTGAAGAAGACTTGCGTTCAGGAAATTTGTGG
ATAATTAATCCTTTTATGAACCATCAAAATAGTAATCTCACGGACTTTGAAGAAGAAAAA
CTAGCACAGTTATCTTCAGATTTAGGATTACAATCAATATTTAAATCAATGTCTGTAACT
CAGTTTTGGATAAATGCAAAGGCAAGTTACCCAGAACTCCATGAAAAGGCAATGAAATTT
TTATTGCCTTTTTCAACTATTTATTTATGTGATGCTACATTTTCAGCTTTGACTGAGTTA
AAGCAAAGAAATCTGTTGGTTTCTGGCCCTGCCCTACGACTTGCAGTCACGTCTTTAATT
CCGAGAATAGAGAAATTAGTCAAGGAAAAAGAATAGTAATGTGCATATTGCTTATTATCA
AAGTCTATAATTTTGTGTTAAATTTTGTATGAGATAAATATCCTAAAATATAATTTCCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61882943|ref|XP_592089.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61882943|ref|XP_592089.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-840, gnl|bosTau2|chr3 (77802051-77802885)
               

               
               1-840, gnl|Hg17|chr1 (35122553-35121719)
               

               
               1-840, gnl|Mm7|chr4 (126568069-126568900)
               


               
               3-173, gnl|bosTau2|chr25 (34416277-34416107)
               

               
               3-173, gnl|echTel1|scaffold_63392 (4-935)
               

               
               3-173, gnl|hg17|chr7 (98789405-98790371)
               

               
               3-173, gnl|Hg17|chr7 (98789764-98789594)
               

               
               3-173, gnl|panTro1|chr6 (100496553-100497519)
               

               
               3-173, gnl|rheMac2|chr3 (46750305-46751271)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr3 (77802051-77802885)
               

               
               1-840, gnl|Hg17|chr1 (35122553-35121719)
               

               
               1-840, gnl|Mm7|chr4 (126568069-126568900)
               


               
               3-173, gnl|bosTau2|chr25 (34416277-34416107)
               

               
               3-173, gnl|echTel1|scaffold_63392 (4-935)
               

               
               3-173, gnl|hg17|chr7 (98789405-98790371)
               

               
               3-173, gnl|Hg17|chr7 (98789764-98789594)
               

               
               3-173, gnl|panTro1|chr6 (100496553-100497519)
               

               
               3-173, gnl|rheMac2|chr3 (46750305-46751271)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

	1-840, gnl\|bosTau2\|chr3 (77802051-77802885)
	1-840, gnl\|Hg17\|chr1 (35122553-35121719)
	1-840, gnl\|Mm7\|chr4 (126568069-126568900)

	3-173, gnl\|bosTau2\|chr25 (34416277-34416107)
	3-173, gnl\|echTel1\|scaffold_63392 (4-935)
	3-173, gnl\|hg17\|chr7 (98789405-98790371)
	3-173, gnl\|Hg17\|chr7 (98789764-98789594)
	3-173, gnl\|panTro1\|chr6 (100496553-100497519)
	3-173, gnl\|rheMac2\|chr3 (46750305-46751271)

	pro (0.512033)
	spl (0.143184)
	bla (0.124347)
	tra (0.123092)
	nbm (0.0993246)