Non-Coding RNA Search

Ss1.1-rtra29_d14.5

Sequence:


               
               TGCAATGTCAAATTTAAAAAAATGCGGTACTGTAAGATGGGGGGGAGGGAAAAATTTTTT
TATTTTTTTTTTTTTAATTTTGTATGTTAAAGAGAGTGAGTCCTTGATTTCAAATTTTTA
TTGTGCTTAGATGCTAATAAGCACCTGATTAAGGGGAAGATTGCAAACCATGCCTTGGCA
ATGCTGGGAAGGCAAATTTCTCCCTTGACTGTCCTGAGTGTTTGAATAAACCTGGGACTT
CTGAGCTATTTCAGCACTGTTAAGTGGCACTAGGGACTCAGAAATTCTCGTACTGTATAT
CATGTGTCTGGCATTAGCCAAGGCTAGGCACAACTACTGGTCTCACATCCTGGTGGCATC
TTGCAGTTTTTAAGAGTGTATGAGTATCTAAGATAAGGGGTGAAAGAATATTAAGGACAG
ACAAGTCTATGGGGGCTTAATGGGGTTCCTATGGCCTCAATCCAGTTAGCTGAAGAATGG
ATGTATTTTTGTTTGGATGTATTAGAAATGGAAATGGAGAATAGAATTTTCTTCATTAAA
TCCATTTACCTTTTGTTTAGGATATTCACCTAAAATACAGTATGTGGGATGTTGAATGTT
AAAGGGTTGTGTTTTTGTTTTTGTTTTTTATTATTTTTATAATTGTAAAAATTAAGTAAA
TGCCAAATGTTTTATATGCTTTATTAATGTTTTTGAAAGGTTCTTTCTTATAGATGTGAT
GCTTTTTTGATATTTTGTGTAATGTTTCATTTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAATGTCAAATTTAAAAAAATGCGGTACTGTAAGATGGGGGGGAGGGAAAAATTTTTT
TATTTTTTTTTTTTTAATTTTGTATGTTAAAGAGAGTGAGTCCTTGATTTCAAATTTTTA
TTGTGCTTAGATGCTAATAAGCACCTGATTAAGGGGAAGATTGCAAACCATGCCTTGGCA
ATGCTGGGAAGGCAAATTTCTCCCTTGACTGTCCTGAGTGTTTGAATAAACCTGGGACTT
CTGAGCTATTTCAGCACTGTTAAGTGGCACTAGGGACTCAGAAATTCTCGTACTGTATAT
CATGTGTCTGGCATTAGCCAAGGCTAGGCACAACTACTGGTCTCACATCCTGGTGGCATC
TTGCAGTTTTTAAGAGTGTATGAGTATCTAAGATAAGGGGTGAAAGAATATTAAGGACAG
ACAAGTCTATGGGGGCTTAATGGGGTTCCTATGGCCTCAATCCAGTTAGCTGAAGAATGG
ATGTATTTTTGTTTGGATGTATTAGAAATGGAAATGGAGAATAGAATTTTCTTCATTAAA
TCCATTTACCTTTTGTTTAGGATATTCACCTAAAATACAGTATGTGGGATGTTGAATGTT
AAAGGGTTGTGTTTTTGTTTTTGTTTTTTATTATTTTTATAATTGTAAAAATTAAGTAAA
TGCCAAATGTTTTATATGCTTTATTAATGTTTTTGAAAGGTTCTTTCTTATAGATGTGAT
GCTTTTTTGATATTTTGTGTAATGTTTCATTTGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               144-756, gnl|bosTau2|chr1 (47316474-47315853)
               

               
               144-756, gnl|Hg17|chr3 (191097058-191097650)
               

               
               144-756, gnl|Mm7|chr16 (25552966-25553516)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-756, gnl|bosTau2|chr1 (47316474-47315853)
               

               
               144-756, gnl|Hg17|chr3 (191097058-191097650)
               

               
               144-756, gnl|Mm7|chr16 (25552966-25553516)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	144-756, gnl\|bosTau2\|chr1 (47316474-47315853)
	144-756, gnl\|Hg17\|chr3 (191097058-191097650)
	144-756, gnl\|Mm7\|chr16 (25552966-25553516)

	ski (0.29347)
	lyg (0.266205)
	tra (0.246184)
	csk (0.140746)
	ret (0.128733)
	bla (0.124347)