Ss1.1-rtra29_n19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGTATGCTTAGTTTATCTGAAATGAGGTCACCTGGAATACATTCGAATATCGATCTTA GTGTCCTCATAAAAGCCCCGGATTTTGTTCCAAAACCTGTTGTAGACCAATCAGTTGCTC CAATGTCAGGGACTAAAGTTCTAAGTTCAAAGTTAGGGAAAAATTCCAGTTCTGCTAAGG ATAATAAGAAAAACTGTAAAGGCTCTCTGACTAGGAAATCACCTTTTTCTCTGTCTTGGA CCAAGGCCCTTGCTGCCAGACCTTCAGCTTTTGCTTCAACACTGTGTCTTCGTTATCCAT TGAAAAGCTGCAAGCGACGCACTCTTGACCTCTATAAGACTTTTCTTTATAGTAGACAAG TTCAAGATGTAAAGGACAAAGAAATAAGTCCTCTTATAGCAATAACACCGTTTGACTTCA AATCAGCATCTCCTGATGACATTGTAAAAGCTAATCAAAAGAAAGCTTTTACTAGAGAAT AGTAACAAAAGGAAAACTCGATAACTGTTGTAGCTTTTTCTTTTAAATTAATTTAGTCTT TATAGGATTACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGTATGCTTAGTTTATCTGAAATGAGGTCACCTGGAATACATTCGAATATCGATCTTA GTGTCCTCATAAAAGCCCCGGATTTTGTTCCAAAACCTGTTGTAGACCAATCAGTTGCTC CAATGTCAGGGACTAAAGTTCTAAGTTCAAAGTTAGGGAAAAATTCCAGTTCTGCTAAGG ATAATAAGAAAAACTGTAAAGGCTCTCTGACTAGGAAATCACCTTTTTCTCTGTCTTGGA CCAAGGCCCTTGCTGCCAGACCTTCAGCTTTTGCTTCAACACTGTGTCTTCGTTATCCAT TGAAAAGCTGCAAGCGACGCACTCTTGACCTCTATAAGACTTTTCTTTATAGTAGACAAG TTCAAGATGTAAAGGACAAAGAAATAAGTCCTCTTATAGCAATAACACCGTTTGACTTCA AATCAGCATCTCCTGATGACATTGTAAAAGCTAATCAAAAGAAAGCTTTTACTAGAGAAT AGTAACAAAAGGAAAACTCGATAACTGTTGTAGCTTTTTCTTTTAAATTAATTTAGTCTT TATAGGATTACT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 357-476, - strand, RNAz p=0.689201 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 357-476, - strand, RNAz p=0.689201 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-540, gnl|bosTau2|chr9 (43263688-43264229) | |
| 1-540, gnl|canFam2|chr1 (30814114-30815188) | |
| 1-540, gnl|canFam2|chr1 (30814114-30815067) | |
| 1-540, gnl|dasNov1|scaffold_1538 (92110-93182) | |
| 1-540, gnl|dasNov1|scaffold_1538 (92110-93067) | |
| 1-540, gnl|echTel1|scaffold_224404 (1435-532) | |
| 1-540, gnl|echTel1|scaffold_315444 (10539-9478) | |
| 1-540, gnl|galGal2|chr3 (54683642-54682541) | |
| 1-540, gnl|galGal2|chr3 (54683640-54682669) | |
| 1-540, gnl|hg17|chr4 (2057516-2058459) | |
| 1-540, gnl|hg17|chr6 (135399234-135400298) | |
| 1-540, gnl|Hg17|chr6 (135399870-135399339) | |
| 1-540, gnl|loxAfr1|scaffold_6975 (54260-53181) | |
| 1-540, gnl|loxAfr1|scaffold_6975 (54260-53302) | |
| 1-540, gnl|mm7|chr10 (21036743-21035715) | |
| 1-540, gnl|mm7|chr10 (71913553-71912609) | |
| 1-540, gnl|Mm7|chr10 (21036090-21036624) | |
| 1-540, gnl|monDom2|scaffold_0 (75688899-75687814) | |
| 1-540, gnl|monDom2|scaffold_0 (75688900-75687947) | |
| 1-540, gnl|oryCun1|scaffold_212611 (65706-66769) | |
| 1-540, gnl|oryCun1|scaffold_212611 (65705-66648) | |
| 1-540, gnl|panTro1|chr3 (2160735-2161678) | |
| 1-540, gnl|panTro1|chr5 (138180207-138181273) | |
| 1-540, gnl|rheMac2|chr1 (1861254-1860319) | |
| 1-540, gnl|rheMac2|chr4 (128809829-128808765) | |
| 1-540, gnl|rn3|chr1 (16674142-16673130) | |
| 1-540, gnl|rn3|chr1 (16674143-16673215) | |
| 1-540, gnl|xenTro1|scaffold_422 (977074-976064) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-540, gnl|bosTau2|chr9 (43263688-43264229) | |
| 1-540, gnl|canFam2|chr1 (30814114-30815188) | |
| 1-540, gnl|canFam2|chr1 (30814114-30815067) | |
| 1-540, gnl|dasNov1|scaffold_1538 (92110-93182) | |
| 1-540, gnl|dasNov1|scaffold_1538 (92110-93067) | |
| 1-540, gnl|echTel1|scaffold_224404 (1435-532) | |
| 1-540, gnl|echTel1|scaffold_315444 (10539-9478) | |
| 1-540, gnl|galGal2|chr3 (54683642-54682541) | |
| 1-540, gnl|galGal2|chr3 (54683640-54682669) | |
| 1-540, gnl|hg17|chr4 (2057516-2058459) | |
| 1-540, gnl|hg17|chr6 (135399234-135400298) | |
| 1-540, gnl|Hg17|chr6 (135399870-135399339) | |
| 1-540, gnl|loxAfr1|scaffold_6975 (54260-53181) | |
| 1-540, gnl|loxAfr1|scaffold_6975 (54260-53302) | |
| 1-540, gnl|mm7|chr10 (21036743-21035715) | |
| 1-540, gnl|mm7|chr10 (71913553-71912609) | |
| 1-540, gnl|Mm7|chr10 (21036090-21036624) | |
| 1-540, gnl|monDom2|scaffold_0 (75688899-75687814) | |
| 1-540, gnl|monDom2|scaffold_0 (75688900-75687947) | |
| 1-540, gnl|oryCun1|scaffold_212611 (65706-66769) | |
| 1-540, gnl|oryCun1|scaffold_212611 (65705-66648) | |
| 1-540, gnl|panTro1|chr3 (2160735-2161678) | |
| 1-540, gnl|panTro1|chr5 (138180207-138181273) | |
| 1-540, gnl|rheMac2|chr1 (1861254-1860319) | |
| 1-540, gnl|rheMac2|chr4 (128809829-128808765) | |
| 1-540, gnl|rn3|chr1 (16674142-16673130) | |
| 1-540, gnl|rn3|chr1 (16674143-16673215) | |
| 1-540, gnl|xenTro1|scaffold_422 (977074-976064) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.123092) | |
| cbl (0.114797) |