Non-Coding RNA Search

Ss1.1-rtra30_b23.5

Sequence:


               
               GGTTGGTATTTAATGTAGTTGACTTAAAGAACTTAAGTTCTAAATAACAGTTGCATTAGG
TGATCTATAGGTAAGGGCTTTTTCTCCTCCCCATACCCTTAAGAATAGCTCTGTGTATGT
GAAAGAGTGGGTGATGTTTTTGGCTAAATACTTTTTTCATTTTACCAAGAAACTGAAATA
ACTTTGGCCAGGAGAAAATACTTCCTGAACATTTTATTTCTCTTTTTCAAGAAAAAGACA
GAGGATTTTCCTTGAGTCCCTGCTAAAACATTCCATTGTTAAAATTTGCACTTTGAAGGT
AAGCTTTTTAGGCCTGACCCTCCAGGTGTCAATGGACTTGTGCTACTATATTTTTTAATC
TTGGTATCAGTTAAAAGTTCAGACAAGGCCCACAGAAAAAGATGTTCCAAGCATTTGCAA
ATCTCAGCCGGTTACACAAACCTTCTTTTTTACATCCACTTGCTTATATTATTACCATCA
CTTTACGTCATTCCTCAACTACTATCACATCCATTTAATGATTTCTGTAAACATTTTTTA
AACAGTTAGGATGTCACTTAACATTTTTTGAGTTAGAGTCAGGGAAGCAAGCCATGCTCA
ATATTTAACAATCACTTGTATGTATATGTTTGTGGAAGAGTGTGTTTTATTTGTCATGTA
TTGGTACAAGCAGATGCAGTATAAACTCACAAACACAGATTTGAAAATAATGCACACAGT
GTTCAAATTTGAACTTTTCTCATGGATTTCATGGTATGGGCCAACATGGTGTTTACATTA
TATAATTCCTGCTGTGCAAGTAAAGCACACTTTTTTTTCCCTAAAATTTTTTTTCCCCAT
GTATCCTATTATGGATACTAGTTTTGTTAATTATGATTCTTTTTTTTCTCTTTTCTTTTT
TTTTAGAATATAGCAGTTAATGCTATTGCTGAAATGAATGATTTTTTTTCTGAAATATAA
TCATTGATGCTTGAATGATAGAATTTTAGTACTGTAAACAGGCTTTAGTAATTAATGTGA
GAGACTTAGAAGAAATGCTTAGAATGGACTATTGAGTGTGCCTAAATGAATTCTGCAGTA
ACTGGTATTCTTGGTTTTGTGCTACTTAATACACATTAATTCAGAAACTGTATTCTGTTA
TGAGTTTGACAGTCTTTTGGAGCAACCAACAACTTTGATGTTTGCACTAAGATTTTATTT
GGAATGCAAGAGAGGTTGAAAGAGCTTTCAGTAGTACACATGTAACTAATTTATTTGAAA
TCTGTCCTAAAGAAATCTACCAGTTTGTTCAAATGCCTTTTTAAAATTCATCACAGATAA
TTAGTGAAAACGCAGAGTATCGTACTTTTCTTCTTGCATGTCAACAACATAAACAGTTTT
GTACAATGAGAAATACTAATTTGTTTGACATTCCATATTAAACTACTGTCATGTTCAGCT
TCATTGCATGTAATGTAGACTAGTCCATCAGATCATGTGTTTCTGGAGAGTGTTCTTTAT
TCAATAAAGTTTTAATTTAGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGGTATTTAATGTAGTTGACTTAAAGAACTTAAGTTCTAAATAACAGTTGCATTAGG
TGATCTATAGGTAAGGGCTTTTTCTCCTCCCCATACCCTTAAGAATAGCTCTGTGTATGT
GAAAGAGTGGGTGATGTTTTTGGCTAAATACTTTTTTCATTTTACCAAGAAACTGAAATA
ACTTTGGCCAGGAGAAAATACTTCCTGAACATTTTATTTCTCTTTTTCAAGAAAAAGACA
GAGGATTTTCCTTGAGTCCCTGCTAAAACATTCCATTGTTAAAATTTGCACTTTGAAGGT
AAGCTTTTTAGGCCTGACCCTCCAGGTGTCAATGGACTTGTGCTACTATATTTTTTAATC
TTGGTATCAGTTAAAAGTTCAGACAAGGCCCACAGAAAAAGATGTTCCAAGCATTTGCAA
ATCTCAGCCGGTTACACAAACCTTCTTTTTTACATCCACTTGCTTATATTATTACCATCA
CTTTACGTCATTCCTCAACTACTATCACATCCATTTAATGATTTCTGTAAACATTTTTTA
AACAGTTAGGATGTCACTTAACATTTTTTGAGTTAGAGTCAGGGAAGCAAGCCATGCTCA
ATATTTAACAATCACTTGTATGTATATGTTTGTGGAAGAGTGTGTTTTATTTGTCATGTA
TTGGTACAAGCAGATGCAGTATAAACTCACAAACACAGATTTGAAAATAATGCACACAGT
GTTCAAATTTGAACTTTTCTCATGGATTTCATGGTATGGGCCAACATGGTGTTTACATTA
TATAATTCCTGCTGTGCAAGTAAAGCACACTTTTTTTTCCCTAAAATTTTTTTTCCCCAT
GTATCCTATTATGGATACTAGTTTTGTTAATTATGATTCTTTTTTTTCTCTTTTCTTTTT
TTTTAGAATATAGCAGTTAATGCTATTGCTGAAATGAATGATTTTTTTTCTGAAATATAA
TCATTGATGCTTGAATGATAGAATTTTAGTACTGTAAACAGGCTTTAGTAATTAATGTGA
GAGACTTAGAAGAAATGCTTAGAATGGACTATTGAGTGTGCCTAAATGAATTCTGCAGTA
ACTGGTATTCTTGGTTTTGTGCTACTTAATACACATTAATTCAGAAACTGTATTCTGTTA
TGAGTTTGACAGTCTTTTGGAGCAACCAACAACTTTGATGTTTGCACTAAGATTTTATTT
GGAATGCAAGAGAGGTTGAAAGAGCTTTCAGTAGTACACATGTAACTAATTTATTTGAAA
TCTGTCCTAAAGAAATCTACCAGTTTGTTCAAATGCCTTTTTAAAATTCATCACAGATAA
TTAGTGAAAACGCAGAGTATCGTACTTTTCTTCTTGCATGTCAACAACATAAACAGTTTT
GTACAATGAGAAATACTAATTTGTTTGACATTCCATATTAAACTACTGTCATGTTCAGCT
TCATTGCATGTAATGTAGACTAGTCCATCAGATCATGTGTTTCTGGAGAGTGTTCTTTAT
TCAATAAAGTTTTAATTTAGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1267-1539, gnl|bosTau2|chr19 (48663147-48663402)
               

               
               1267-1539, gnl|Hg17|chr5 (108413420-108413169)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1267-1539, gnl|bosTau2|chr19 (48663147-48663402)
               

               
               1267-1539, gnl|Hg17|chr5 (108413420-108413169)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               ret (3.21833)
               

               
               fco (2.20091)
               

               
               aor (1.75747)
               

               
               tra (0.984737)
               

               
               fbs (0.876732)
               

               
               fhi (0.847889)
               

               
               ova (0.774793)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               ste (0.405625)
               

               
               eye (0.341006)
               

               
               ctl (0.306138)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               nca (0.273748)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (3.21833)
               

               
               fco (2.20091)
               

               
               aor (1.75747)
               

               
               tra (0.984737)
               

               
               fbs (0.876732)
               

               
               fhi (0.847889)
               

               
               ova (0.774793)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               ste (0.405625)
               

               
               eye (0.341006)
               

               
               ctl (0.306138)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               nca (0.273748)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1267-1539, gnl\|bosTau2\|chr19 (48663147-48663402)
	1267-1539, gnl\|Hg17\|chr5 (108413420-108413169)

	ret (3.21833)
	fco (2.20091)
	aor (1.75747)
	tra (0.984737)
	fbs (0.876732)
	fhi (0.847889)
	ova (0.774793)
	mga (0.480615)
	mgp (0.461361)
	bfe (0.449573)
	ste (0.405625)
	eye (0.341006)
	ctl (0.306138)
	liv (0.292569)
	lin (0.291206)
	nca (0.273748)
	nms (0.213858)
	fcc (0.197785)
	sag (0.182715)
	gul (0.177588)
	ton (0.1755)
	mcp (0.170648)
	nco (0.161734)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	cbr (0.127975)
	bla (0.124347)
	eep (0.122564)
	clu (0.119646)
	nbm (0.0993246)
	eje (0.0988338)