Non-Coding RNA Search

Ss1.1-rtra30_j18.5.5

Sequence:


               
               AAAAAAAAGTTTCAAAATACTCCTCATTTAAAGAAACGTTAGAGTTATATGAAGATTTGT
GACTATTATATTGGGGTTTTGTCTGGAGGTACTCAGAATAAAATATAACCATATTAATAG
GTACAATTTTTTTCAGTTGTGAGAAAGTAAAATATACCTTCATATTTTTATTTTTAATTT
TTTTATTATTATTATTATTATTTTGGTCTTTTCAGGGCCTCACCCACGGCATATGGAAGT
TCCCAGGCTAGGGGTGGAATGGGAGCTATAACTGCTGGCCTACACCACAGCCACAGCAAT
GCAGGATCTGAGCCACGTGTGCGACCTACACCACAGCTCATGGTAACGCCAGATCCTTAA
CCCACTGAGTTAGGCCAGGGATTTAACCCTCCTCCTTATGGATACTAGTCAGATTCATTA
CTGCTGAGCCACAACAGGAACTGCCTACCCTCCTATTTTAAAAAGTTTCATCACAGTAAT
TTCCGGTTGAAGTGCTTTGTATTCTAGTGGTGCCTGTCGCACTGTTGGTTTTGTTAAATG
TTAAATGCCGTTTTAATATACACACTCAAGGCAGGAAACATTTACACTTCCTTTGGTCAT
TGAATGAAATAAATATTTTAATAAATATTTATGTTTTTCTGATATTTGGCTCTACGGCCA
TATAAGAAACAATTCTTTTAACCCAAGTGTTGTAGAAAGGCCCACTTCCTGAGGGTTAAT
TAGTAGGTTGGCTTTGTGGAAACAAAATGTTGCCTTCCCTTGGTCACAGACTCAGGAGAT
GGCCCTACTCAAATCACTGGGTTCCACTGGGATTTTTCGACTGCTGATCTTGAAAATCAT
GGTGATAAACAAAAGCTTAGCTCTTTCCATATCATTAGTGATGACAAGTCTGGCAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAGTTTCAAAATACTCCTCATTTAAAGAAACGTTAGAGTTATATGAAGATTTGT
GACTATTATATTGGGGTTTTGTCTGGAGGTACTCAGAATAAAATATAACCATATTAATAG
GTACAATTTTTTTCAGTTGTGAGAAAGTAAAATATACCTTCATATTTTTATTTTTAATTT
TTTTATTATTATTATTATTATTTTGGTCTTTTCAGGGCCTCACCCACGGCATATGGAAGT
TCCCAGGCTAGGGGTGGAATGGGAGCTATAACTGCTGGCCTACACCACAGCCACAGCAAT
GCAGGATCTGAGCCACGTGTGCGACCTACACCACAGCTCATGGTAACGCCAGATCCTTAA
CCCACTGAGTTAGGCCAGGGATTTAACCCTCCTCCTTATGGATACTAGTCAGATTCATTA
CTGCTGAGCCACAACAGGAACTGCCTACCCTCCTATTTTAAAAAGTTTCATCACAGTAAT
TTCCGGTTGAAGTGCTTTGTATTCTAGTGGTGCCTGTCGCACTGTTGGTTTTGTTAAATG
TTAAATGCCGTTTTAATATACACACTCAAGGCAGGAAACATTTACACTTCCTTTGGTCAT
TGAATGAAATAAATATTTTAATAAATATTTATGTTTTTCTGATATTTGGCTCTACGGCCA
TATAAGAAACAATTCTTTTAACCCAAGTGTTGTAGAAAGGCCCACTTCCTGAGGGTTAAT
TAGTAGGTTGGCTTTGTGGAAACAAAATGTTGCCTTCCCTTGGTCACAGACTCAGGAGAT
GGCCCTACTCAAATCACTGGGTTCCACTGGGATTTTTCGACTGCTGATCTTGAAAATCAT
GGTGATAAACAAAAGCTTAGCTCTTTCCATATCATTAGTGATGACAAGTCTGGCAAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               639-752, + strand, RNAz p=0.984142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-752, + strand, RNAz p=0.984142

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-170, gnl|bosTau2|chr27 (5639456-5639286)
               

               
               3-170, gnl|Hg17|chr4 (187381447-187381616)
               


               
               564-865, gnl|bosTau2|chr27 (5638965-5638661)
               

               
               564-865, gnl|Hg17|chr4 (187381726-187382029)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-170, gnl|bosTau2|chr27 (5639456-5639286)
               

               
               3-170, gnl|Hg17|chr4 (187381447-187381616)
               


               
               564-865, gnl|bosTau2|chr27 (5638965-5638661)
               

               
               564-865, gnl|Hg17|chr4 (187381726-187382029)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tra (0.246184)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

	3-170, gnl\|bosTau2\|chr27 (5639456-5639286)
	3-170, gnl\|Hg17\|chr4 (187381447-187381616)

	564-865, gnl\|bosTau2\|chr27 (5638965-5638661)
	564-865, gnl\|Hg17\|chr4 (187381726-187382029)

	tra (0.246184)
	cut (0.169924)
	lun (0.150489)
	lyg (0.133103)
	kid (0.129735)