Non-Coding RNA Search

Ss1.1-rtra30_p5.5

Sequence:


               
               GTGCCTCGGGTGTGGCCCTCAAAGAGAAAAAATAAAAAATAAAAATAAAGCAGTGAGCAT
TTTTTGAAATGTCTAAACTACTGGTTGAGTAGAAGCTTGATCCTTGCAGTAGAGTGAACT
TTAGTGGTTGTATTGGCTTGATTGGCAGTTCTGAGTTTCAAAAATCTGTCCATCCATCCC
ATCCATCCTGTGAGTGGATCCTATGTAGGATGGGATAGGAAGGGCGGTCCTGTCAGTGTC
TCAGCCCTTTGAACAAAAGACCTATTTGACTTGTTCATTCCACTCTCAAAACATTAACTT
AAATAAATTGTAAATGTGTTATGTATATGTTGATGGGACGAGAGCAGTATTATTGAATCA
AAGAGACATTTATATATTATTATAGTGAACTTTATGTTAGTTCATTTTTATCTTTAAACA
GTTATCACTCAAAGCCAGTGACTCCTCTAGTATACCAAGAAAACCTTTCAGTAAAGCCAG
CCTTTTTCACTAAGGCTTTGGTGTGTATTTGTTAAGCAATCGACTAATATGCTGCTGTGC
TTTCTGGGTGGTAGAAAGTGTTTGGCTCTGGGAAATATTTACCTGTTTATGACAGCAATA
CTCAAAAGTAATAGGAAAACCTTTTTATTAAGATTTTGTTAATTCGGTGAGTGAATTCAG
AATAAGTACATTTACTTATAATGTAGGGACAGTTCTGCTGCTGTTATTAATGTGTAAGTT
CTTCAGATAAACAGCAATAGAATAAAAATTATTTCAATGCTCTGTCCCATAGGTTTTGTG
TTCTGTTCCATTAAGCTTGGTAGAAGAATTTAAAGATAAATTCTTGAAACATTAAAGGAT
TAAAAATGCCTTTGCATTGTTCTTGGGTATTTCCTTCTCTTGCCCATATCTGGTAAGTTT
TAAAGCTGATTGCACTTAATTCCTTTATTTGGAGAGTTTTAATTCATTGTAAATATATAA
ATTTGCAAATGAAGGACAAAGATGAGATGGAACGTGTATATTTATTGTCACTTCTTAAAA
TACTGTGTAAATAAAATGATATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCTCGGGTGTGGCCCTCAAAGAGAAAAAATAAAAAATAAAAATAAAGCAGTGAGCAT
TTTTTGAAATGTCTAAACTACTGGTTGAGTAGAAGCTTGATCCTTGCAGTAGAGTGAACT
TTAGTGGTTGTATTGGCTTGATTGGCAGTTCTGAGTTTCAAAAATCTGTCCATCCATCCC
ATCCATCCTGTGAGTGGATCCTATGTAGGATGGGATAGGAAGGGCGGTCCTGTCAGTGTC
TCAGCCCTTTGAACAAAAGACCTATTTGACTTGTTCATTCCACTCTCAAAACATTAACTT
AAATAAATTGTAAATGTGTTATGTATATGTTGATGGGACGAGAGCAGTATTATTGAATCA
AAGAGACATTTATATATTATTATAGTGAACTTTATGTTAGTTCATTTTTATCTTTAAACA
GTTATCACTCAAAGCCAGTGACTCCTCTAGTATACCAAGAAAACCTTTCAGTAAAGCCAG
CCTTTTTCACTAAGGCTTTGGTGTGTATTTGTTAAGCAATCGACTAATATGCTGCTGTGC
TTTCTGGGTGGTAGAAAGTGTTTGGCTCTGGGAAATATTTACCTGTTTATGACAGCAATA
CTCAAAAGTAATAGGAAAACCTTTTTATTAAGATTTTGTTAATTCGGTGAGTGAATTCAG
AATAAGTACATTTACTTATAATGTAGGGACAGTTCTGCTGCTGTTATTAATGTGTAAGTT
CTTCAGATAAACAGCAATAGAATAAAAATTATTTCAATGCTCTGTCCCATAGGTTTTGTG
TTCTGTTCCATTAAGCTTGGTAGAAGAATTTAAAGATAAATTCTTGAAACATTAAAGGAT
TAAAAATGCCTTTGCATTGTTCTTGGGTATTTCCTTCTCTTGCCCATATCTGGTAAGTTT
TAAAGCTGATTGCACTTAATTCCTTTATTTGGAGAGTTTTAATTCATTGTAAATATATAA
ATTTGCAAATGAAGGACAAAGATGAGATGGAACGTGTATATTTATTGTCACTTCTTAAAA
TACTGTGTAAATAAAATGATATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               326-438, - strand, RNAz p=0.895661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-438, - strand, RNAz p=0.895661

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-1044, gnl|bosTau2|chr23 (18435138-18434132)
               

               
               21-1044, gnl|Hg17|chr6 (46221271-46222228)
               

               
               21-1044, gnl|Mm7|chr17 (42219974-42219064)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-1044, gnl|bosTau2|chr23 (18435138-18434132)
               

               
               21-1044, gnl|Hg17|chr6 (46221271-46222228)
               

               
               21-1044, gnl|Mm7|chr17 (42219974-42219064)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pro (0.512033)
               

               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	21-1044, gnl\|bosTau2\|chr23 (18435138-18434132)
	21-1044, gnl\|Hg17\|chr6 (46221271-46222228)
	21-1044, gnl\|Mm7\|chr17 (42219974-42219064)

	pro (0.512033)
	tra (0.369276)
	liv (0.292569)
	kid (0.259471)
	ton (0.1755)
	cki (0.165235)
	fco (0.157208)
	lin (0.145603)
	lyg (0.133103)
	spc (0.113366)
	jej (0.0989218)