Non-Coding RNA Search

Ss1.1-rtra31_g9.5

Sequence:


               
               AATCTTCATGAAACAACTAATCTGTCAATACAGCAAAAGCGACATGGGAGAGTGAAAACT
TGGACGCGGCATGTAGATATTTTTGAGAAGGATTTTATTTTTGTACCCCTCAATGAAGCT
GCACACTGGTTTTTGGCTGTTGTTTGTTTCCCTGGTTTGGAAAAACCAAAGTATGAACCC
AATCCTCATTACCATGAAAATACAGTCATGCAAAAATGTTCACCTGTAGAGGACAGTTGT
ATTTCTTCTCCTTCAGCCAGTGAAATGGACAGTTGTTCACAAAACTCATCTGCCAAGCCC
GTAATTAAGAAGATGCTAAACAGAAAGCATTGCGTAGCTGTAATTGATTCAAATAATGAA
CAGGAAGAAAGTGACCCTCGTTATCGGAGAAACATAAGCAGTGTGAAATGTAGTCTGAAA
AAAATAAATCATACTGCAAGTCAAAATGAAGAATCGAATAAAGGAGAATCTGCATGCCAG
AAAGTTGTTGATAGGACTAAAAGTGAGAATGGCCTACAGAATGAATATTTAAGTTCTATG
CAACATACAGATGGCTTAAGCAAAATCAGACTAAACTACAGTGATGAATCAGGTGAAGGT
AGTAAAATGCTTGAAGATGAACTCATCGACTTCTCAGAAGATCAGGACAACGAGGATGAC
AGCAGTGATGATGGGTTCCTTGCTGATGACAACTGCAATTCAGAAATAGGACAGTGGCAT
TTGAAGCCTACAATTTGTAAACAACCTTGTATCCTACTGATGGACTCACTCAGAGGCCCT
TCTCGGTCAAATGTTGTAAAAATTCTAAGAGAGTATTTAGAGGTGGAATGGGAAGTTAAA
AAAGGAAGCAAAAGAAGTTTTTCCAAAGATGTTATGAAAGGCTCTAACCCAAAAGTACCC
CAGCAAAACAATTTCAGTGATTGTGGTGTGTATGTATTGCAGTATGTAGAGAGCTTTTTC
GAGAATCCAATTCTCAATTTTGAACTACCTATGAATTTGGCAAATTGGTTTCCTCCTCCA
AGAATGAGAACAAAAAGAGAAGAAATCCGAAACATAATTCTGAAGCTTCAGGAAGATCAG
AGCAAAGAGAAAAAGAAGCATAAGGACACTTACTCAACAGAACCATCTTCAGGCGAAGGA
GCAGAACACTATGTCAGTAGCATCTCAGATTGACCACTGCCACTGCTTGTCAGTATTCCT
TCAGAAACCGAGTGACTTTCAACTTTGGGTATAGACAGTAAAGAACTGAAGTGCTCCCTA
CTCAGAGTGATTTGAAAATGTTAATCCTTGTATAAATGTCATATAATTAATTTCCAATGG
AGTATGTTTTAAGTGAAAGTCTGTAAATATGTTAATGAGGCCAATTTTTCCAGCATTTAT
AATTATTTTTTTCACTTGTTAGGAAGCTTTTGTTATGTATTTTCTGTTAATAGTACTTAA
AACTGCAACTTCTAAACTCAAAATAAATAAAAAAATATTTATAGGAGGAAATGATTAATT
TGATATTCTTTAGTGAAATTGTATTGAATTCCTCAGTGGGTGTGAAATACTTCATGGGAA
TATTCGAGTGTTTATGATAATCTTTTACCTTTACATTTGTTCTAAAATGACTTGAAATGT
GAAAATAAGGTTGAATTGAAGGCATATTAAACAAGATATCTTCATATGCTTGTATAGCAG
GCAAACATAACAGCTTTTTAATTTGTACATTCCCATATGTTTAGAGAACTTAGGCCCCAA
AATGTAATAAATATTTAAAGTTTTACTCAACTATTTAATAAACAGTATTTAGAGCAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTTCATGAAACAACTAATCTGTCAATACAGCAAAAGCGACATGGGAGAGTGAAAACT
TGGACGCGGCATGTAGATATTTTTGAGAAGGATTTTATTTTTGTACCCCTCAATGAAGCT
GCACACTGGTTTTTGGCTGTTGTTTGTTTCCCTGGTTTGGAAAAACCAAAGTATGAACCC
AATCCTCATTACCATGAAAATACAGTCATGCAAAAATGTTCACCTGTAGAGGACAGTTGT
ATTTCTTCTCCTTCAGCCAGTGAAATGGACAGTTGTTCACAAAACTCATCTGCCAAGCCC
GTAATTAAGAAGATGCTAAACAGAAAGCATTGCGTAGCTGTAATTGATTCAAATAATGAA
CAGGAAGAAAGTGACCCTCGTTATCGGAGAAACATAAGCAGTGTGAAATGTAGTCTGAAA
AAAATAAATCATACTGCAAGTCAAAATGAAGAATCGAATAAAGGAGAATCTGCATGCCAG
AAAGTTGTTGATAGGACTAAAAGTGAGAATGGCCTACAGAATGAATATTTAAGTTCTATG
CAACATACAGATGGCTTAAGCAAAATCAGACTAAACTACAGTGATGAATCAGGTGAAGGT
AGTAAAATGCTTGAAGATGAACTCATCGACTTCTCAGAAGATCAGGACAACGAGGATGAC
AGCAGTGATGATGGGTTCCTTGCTGATGACAACTGCAATTCAGAAATAGGACAGTGGCAT
TTGAAGCCTACAATTTGTAAACAACCTTGTATCCTACTGATGGACTCACTCAGAGGCCCT
TCTCGGTCAAATGTTGTAAAAATTCTAAGAGAGTATTTAGAGGTGGAATGGGAAGTTAAA
AAAGGAAGCAAAAGAAGTTTTTCCAAAGATGTTATGAAAGGCTCTAACCCAAAAGTACCC
CAGCAAAACAATTTCAGTGATTGTGGTGTGTATGTATTGCAGTATGTAGAGAGCTTTTTC
GAGAATCCAATTCTCAATTTTGAACTACCTATGAATTTGGCAAATTGGTTTCCTCCTCCA
AGAATGAGAACAAAAAGAGAAGAAATCCGAAACATAATTCTGAAGCTTCAGGAAGATCAG
AGCAAAGAGAAAAAGAAGCATAAGGACACTTACTCAACAGAACCATCTTCAGGCGAAGGA
GCAGAACACTATGTCAGTAGCATCTCAGATTGACCACTGCCACTGCTTGTCAGTATTCCT
TCAGAAACCGAGTGACTTTCAACTTTGGGTATAGACAGTAAAGAACTGAAGTGCTCCCTA
CTCAGAGTGATTTGAAAATGTTAATCCTTGTATAAATGTCATATAATTAATTTCCAATGG
AGTATGTTTTAAGTGAAAGTCTGTAAATATGTTAATGAGGCCAATTTTTCCAGCATTTAT
AATTATTTTTTTCACTTGTTAGGAAGCTTTTGTTATGTATTTTCTGTTAATAGTACTTAA
AACTGCAACTTCTAAACTCAAAATAAATAAAAAAATATTTATAGGAGGAAATGATTAATT
TGATATTCTTTAGTGAAATTGTATTGAATTCCTCAGTGGGTGTGAAATACTTCATGGGAA
TATTCGAGTGTTTATGATAATCTTTTACCTTTACATTTGTTCTAAAATGACTTGAAATGT
GAAAATAAGGTTGAATTGAAGGCATATTAAACAAGATATCTTCATATGCTTGTATAGCAG
GCAAACATAACAGCTTTTTAATTTGTACATTCCCATATGTTTAGAGAACTTAGGCCCCAA
AATGTAATAAATATTTAAAGTTTTACTCAACTATTTAATAAACAGTATTTAGAGCAATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858916|ref|XP_588108.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858916|ref|XP_588108.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               319-438, + strand, RNAz p=0.789134
               

               
               1003-1120, - strand, RNAz p=0.625741

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-438, + strand, RNAz p=0.789134
               

               
               1003-1120, - strand, RNAz p=0.625741

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               120-550, gnl|bosTau2|chr9 (5877858-5878288)
               

               
               120-550, gnl|Hg17|chr6 (76469081-76469508)
               

               
               120-550, gnl|Mm7|chr9 (80212905-80213329)
               


               
               956-1781, gnl|bosTau2|chr9 (5888216-5889040)
               

               
               956-1781, gnl|Hg17|chr6 (76481814-76482631)
               

               
               956-1781, gnl|Mm7|chr9 (80220090-80220893)
               


               
               964-1453, gnl|bosTau2|chr25 (14918857-14918377)
               

               
               964-1453, gnl|Hg17|chr6 (76481821-76482309)
               

               
               964-1453, gnl|Mm7|chr9 (80220097-80220586)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-550, gnl|bosTau2|chr9 (5877858-5878288)
               

               
               120-550, gnl|Hg17|chr6 (76469081-76469508)
               

               
               120-550, gnl|Mm7|chr9 (80212905-80213329)
               


               
               956-1781, gnl|bosTau2|chr9 (5888216-5889040)
               

               
               956-1781, gnl|Hg17|chr6 (76481814-76482631)
               

               
               956-1781, gnl|Mm7|chr9 (80220090-80220893)
               


               
               964-1453, gnl|bosTau2|chr25 (14918857-14918377)
               

               
               964-1453, gnl|Hg17|chr6 (76481821-76482309)
               

               
               964-1453, gnl|Mm7|chr9 (80220097-80220586)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               tra (0.61546)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               eje (0.197668)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.61546)
               

               
               spc (0.453463)
               

               
               ski (0.440205)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               eje (0.197668)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	319-438, + strand, RNAz p=0.789134
	1003-1120, - strand, RNAz p=0.625741

	120-550, gnl\|bosTau2\|chr9 (5877858-5878288)
	120-550, gnl\|Hg17\|chr6 (76469081-76469508)
	120-550, gnl\|Mm7\|chr9 (80212905-80213329)

	956-1781, gnl\|bosTau2\|chr9 (5888216-5889040)
	956-1781, gnl\|Hg17\|chr6 (76481814-76482631)
	956-1781, gnl\|Mm7\|chr9 (80220090-80220893)

	964-1453, gnl\|bosTau2\|chr25 (14918857-14918377)
	964-1453, gnl\|Hg17\|chr6 (76481821-76482309)
	964-1453, gnl\|Mm7\|chr9 (80220097-80220586)

	tra (0.61546)
	spc (0.453463)
	ski (0.440205)
	lyg (0.399308)
	aor (0.390549)
	kid (0.389206)
	ova (0.387397)
	sag (0.36543)
	vin (0.332557)
	ret (0.257467)
	pan (0.23596)
	eje (0.197668)
	sin (0.174948)
	mcp (0.170648)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	sug (0.127291)
	bla (0.124347)
	ldo (0.0970026)