Non-Coding RNA Search

Ss1.1-rtra31_o21.5

Sequence:


               
               GGGCACATAAGACTTCTTCCCTTTCTCTCCGGTGGTTTTGTTTCCGAGTGGACCAACAGC
ATAACCCTCAAGGATCTTGTTTTCCCGAGCATGGAGCTGTTGCCTGTTTGCTTCTTTGTC
TTGTCTTTGCGTGCTCAGCTTTTACAGAAGGAAAATCTGTTGTCTGTGAAGATCAAGCAG
AGTCAAAGCTGTGTTTCTCACTGAGATGTGAGTGTGTTCATCACGGATCCAGGGCTCCAG
TTGTTGTGGAAGCCGTATCATGTTAAACATTAACTGGTTGGGTTGAAGGAACATCAATGA
AATAATACACATGCCTTGTAGGTAAACAGCTTTTTTTTTAAGGTCAGATTGCCTCAGGTT
CAGGAAGAGGCCGGGAAATCAAATCTTAAACACAATCAACTTAACGTATTTTTTTTAAAA
AGAGTCTGCCTCAAATGAGGAAACATGTTAGTGGGCTAGGTGGAGGAAGGAGATATTCTT
CAAAATTAAAATACAGTCATGAAATCTGCCAGCAGTGAATGGTAAAGCCAAGAAGAAACA
AGCTGTTCTCATATTACCAAATTCCGTCTGCCTGTCTGTTTTTGTATAACATTTTGGTTA
AAGCGAGCGTCACTTCCCTTTGCCAACCTGCAGAGACTATCTTTCAATACAGAATCTGTC
TATTTATGCTTGTGTTTACAAACTGTATTTGTTGGGTTTGGGTTTTGTTTTTCCTCTATC
TTTTAAGTGGCATTTTCAGGTCACTTTGCTTCAATAACAAAGATAATTTTCAAGTAATTT
GTCTTCACCTTTTCCTGTATTTGTACATAGTAATTCAGTATTAGAGAAAAGTGCATTGTT
TCTGTCATATTTCCAATCTGTGTTGGTGCTCATTTGAGAAAATAAAGTTTTCCAATATTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACATAAGACTTCTTCCCTTTCTCTCCGGTGGTTTTGTTTCCGAGTGGACCAACAGC
ATAACCCTCAAGGATCTTGTTTTCCCGAGCATGGAGCTGTTGCCTGTTTGCTTCTTTGTC
TTGTCTTTGCGTGCTCAGCTTTTACAGAAGGAAAATCTGTTGTCTGTGAAGATCAAGCAG
AGTCAAAGCTGTGTTTCTCACTGAGATGTGAGTGTGTTCATCACGGATCCAGGGCTCCAG
TTGTTGTGGAAGCCGTATCATGTTAAACATTAACTGGTTGGGTTGAAGGAACATCAATGA
AATAATACACATGCCTTGTAGGTAAACAGCTTTTTTTTTAAGGTCAGATTGCCTCAGGTT
CAGGAAGAGGCCGGGAAATCAAATCTTAAACACAATCAACTTAACGTATTTTTTTTAAAA
AGAGTCTGCCTCAAATGAGGAAACATGTTAGTGGGCTAGGTGGAGGAAGGAGATATTCTT
CAAAATTAAAATACAGTCATGAAATCTGCCAGCAGTGAATGGTAAAGCCAAGAAGAAACA
AGCTGTTCTCATATTACCAAATTCCGTCTGCCTGTCTGTTTTTGTATAACATTTTGGTTA
AAGCGAGCGTCACTTCCCTTTGCCAACCTGCAGAGACTATCTTTCAATACAGAATCTGTC
TATTTATGCTTGTGTTTACAAACTGTATTTGTTGGGTTTGGGTTTTGTTTTTCCTCTATC
TTTTAAGTGGCATTTTCAGGTCACTTTGCTTCAATAACAAAGATAATTTTCAAGTAATTT
GTCTTCACCTTTTCCTGTATTTGTACATAGTAATTCAGTATTAGAGAAAAGTGCATTGTT
TCTGTCATATTTCCAATCTGTGTTGGTGCTCATTTGAGAAAATAAAGTTTTCCAATATTA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               605-707, + strand, RNAz p=0.986666

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-707, + strand, RNAz p=0.986666

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001005404, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001005404, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-901, gnl|bosTau2|chr19 (5951772-5952700)
               

               
               1-901, gnl|Hg17|chr17 (54832970-54833872)
               

               
               1-901, gnl|Mm7|chr11 (87007178-87006333)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-901, gnl|bosTau2|chr19 (5951772-5952700)
               

               
               1-901, gnl|Hg17|chr17 (54832970-54833872)
               

               
               1-901, gnl|Mm7|chr11 (87007178-87006333)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               lyg (0.399308)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	1-901, gnl\|bosTau2\|chr19 (5951772-5952700)
	1-901, gnl\|Hg17\|chr17 (54832970-54833872)
	1-901, gnl\|Mm7\|chr11 (87007178-87006333)

	lyg (0.399308)
	mgm (0.360685)
	fbs (0.350693)
	mga (0.32041)
	fat (0.294855)
	pla (0.267344)
	kid (0.259471)
	tra (0.246184)
	pan (0.23596)
	mas (0.210305)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	duo (0.172801)
	fhi (0.169578)
	lin (0.145603)
	pgl (0.118483)
	spc (0.113366)