Ss1.1-rtra32_d17.5
|
AGCTGGGCGCGCTGTGCACTCGCTGGACGCGCGCCGCGGCCGGACGGGCCCTGGCGGGAG
CCCTCCGCCCGTCTTAGTCCCTGCGCCGCCGCGCTCCCCTCCCCCCCGCGCCGGTGTCCG
CGGGCTCAGGGCCGCGCGTCCCGCCCGGACGCGCCGAGGGTCCCCTAGGCGGGGCGGGCC
CGGCTCCGGCGTGACGATGGAGGAGCCGCAGCGCGCTCGCTCGCACACTGTCACCACTAC
CGCCAGTTCCTTCGCGGAGAACTTCTCCACCACCAGCAGCAGCTTCGCGTACGACCGCGA
GTTCCTCCGCACCCTGCCCGGACTCCTCATCGTGGCGGAGATCGTTCTGGGACTGCTGGT
GTGGACACTTATCGCTGGAACCGAGTACTTCCGGGTCCCTGCATTTGGCTGGGTCATGTT
TGTAGCTGTGTTTTACTGGGTGCTCACTGTCTTCTTCCTCATCATCTACATCACAATGAC
CTACACCAGGATTCCCCAAGTGCCCTGGACCACAGTGGGTCTGTGCTTTAACGGCAGTGC
CTTCGTCTTATACCTCTCAGCCGCTATTGTGGATGCATCTTCCGTCTCCCCAGAGAGGGA
CAGTCACAACTTCAACAGCTGGGCAGCCTCGTCGTTCTTCGCCTTTCTGGTCACCATCTG
CTATGCTGGAAACACATATTTCAGTTTTATAGCTTGGAGATCCAGGACCATACAGTGATT
CGCCATTTTGAGAATTAAAAACTGGGGAAAAAAGGAAAAGGAAGAATCTCCCTGTAAGAA
CAGCTGTAGGTATAATGTATATTTGCAGAGACTTGTATTTAACTAATGTTTTTATATACT
TAGTTAAATTTGCTCACAGTGGTTTGTTAGAATTAAACTAGATACTTACTTGCAAAGTGC
TGTAGCTTAGAATGGACTCTTAAATATCTTGTTGATGTCTTCATCACCTTAGTTTCTTAG
GCCATGTATAGATAAATTGCTACTACTAAGAATGTGTCAAGTTTGTAAACCTAACTTTTA
AAATTCCAGATTCTTTTTTTTTTGATTAAATGTTTC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AGCTGGGCGCGCTGTGCACTCGCTGGACGCGCGCCGCGGCCGGACGGGCCCTGGCGGGAG
CCCTCCGCCCGTCTTAGTCCCTGCGCCGCCGCGCTCCCCTCCCCCCCGCGCCGGTGTCCG
CGGGCTCAGGGCCGCGCGTCCCGCCCGGACGCGCCGAGGGTCCCCTAGGCGGGGCGGGCC
CGGCTCCGGCGTGACGATGGAGGAGCCGCAGCGCGCTCGCTCGCACACTGTCACCACTAC
CGCCAGTTCCTTCGCGGAGAACTTCTCCACCACCAGCAGCAGCTTCGCGTACGACCGCGA
GTTCCTCCGCACCCTGCCCGGACTCCTCATCGTGGCGGAGATCGTTCTGGGACTGCTGGT
GTGGACACTTATCGCTGGAACCGAGTACTTCCGGGTCCCTGCATTTGGCTGGGTCATGTT
TGTAGCTGTGTTTTACTGGGTGCTCACTGTCTTCTTCCTCATCATCTACATCACAATGAC
CTACACCAGGATTCCCCAAGTGCCCTGGACCACAGTGGGTCTGTGCTTTAACGGCAGTGC
CTTCGTCTTATACCTCTCAGCCGCTATTGTGGATGCATCTTCCGTCTCCCCAGAGAGGGA
CAGTCACAACTTCAACAGCTGGGCAGCCTCGTCGTTCTTCGCCTTTCTGGTCACCATCTG
CTATGCTGGAAACACATATTTCAGTTTTATAGCTTGGAGATCCAGGACCATACAGTGATT
CGCCATTTTGAGAATTAAAAACTGGGGAAAAAAGGAAAAGGAAGAATCTCCCTGTAAGAA
CAGCTGTAGGTATAATGTATATTTGCAGAGACTTGTATTTAACTAATGTTTTTATATACT
TAGTTAAATTTGCTCACAGTGGTTTGTTAGAATTAAACTAGATACTTACTTGCAAAGTGC
TGTAGCTTAGAATGGACTCTTAAATATCTTGTTGATGTCTTCATCACCTTAGTTTCTTAG
GCCATGTATAGATAAATTGCTACTACTAAGAATGTGTCAAGTTTGTAAACCTAACTTTTA
AAATTCCAGATTCTTTTTTTTTTGATTAAATGTTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
344-518, gnl|bosTau2|chr22 (10801392-10801566) |
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344-518, gnl|canFam2|chr23 (15451789-15451591) |
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344-518, gnl|danRer3|chr16 (1522104-1522299) |
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344-518, gnl|dasNov1|scaffold_44824 (5342-5140) |
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344-518, gnl|echTel1|scaffold_239815 (8092-8290) |
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344-518, gnl|fr1|chrUn (55486911-55487104) |
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344-518, gnl|galGal2|chr2 (39501821-39502015) |
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344-518, gnl|hg17|chr3 (32373854-32374052) |
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344-518, gnl|Hg17|chr3 (32373869-32374043) |
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344-518, gnl|mm7|chr9 (114447327-114447129) |
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344-518, gnl|Mm7|chr9 (114447310-114447136) |
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344-518, gnl|monDom2|scaffold_7 (87900779-87900972) |
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344-518, gnl|oryCun1|scaffold_191008 (6966-7154) |
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344-518, gnl|panTro1|chr2 (33368947-33369145) |
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344-518, gnl|rheMac2|chr2 (174829045-174829243) |
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344-518, gnl|rn3|chr8 (119235667-119235469) |
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344-518, gnl|xenTro1|scaffold_1152 (258405-258587) |
| |
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634-1054, gnl|bosTau2|chr22 (10807938-10808362) |
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634-1054, gnl|Hg17|chr3 (32386379-32386805) |
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634-1054, gnl|Mm7|chr9 (114440842-114440401) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
344-518, gnl|bosTau2|chr22 (10801392-10801566) |
|
344-518, gnl|canFam2|chr23 (15451789-15451591) |
|
344-518, gnl|danRer3|chr16 (1522104-1522299) |
|
344-518, gnl|dasNov1|scaffold_44824 (5342-5140) |
|
344-518, gnl|echTel1|scaffold_239815 (8092-8290) |
|
344-518, gnl|fr1|chrUn (55486911-55487104) |
|
344-518, gnl|galGal2|chr2 (39501821-39502015) |
|
344-518, gnl|hg17|chr3 (32373854-32374052) |
|
344-518, gnl|Hg17|chr3 (32373869-32374043) |
|
344-518, gnl|mm7|chr9 (114447327-114447129) |
|
344-518, gnl|Mm7|chr9 (114447310-114447136) |
|
344-518, gnl|monDom2|scaffold_7 (87900779-87900972) |
|
344-518, gnl|oryCun1|scaffold_191008 (6966-7154) |
|
344-518, gnl|panTro1|chr2 (33368947-33369145) |
|
344-518, gnl|rheMac2|chr2 (174829045-174829243) |
|
344-518, gnl|rn3|chr8 (119235667-119235469) |
|
344-518, gnl|xenTro1|scaffold_1152 (258405-258587) |
| |
|
634-1054, gnl|bosTau2|chr22 (10807938-10808362) |
|
634-1054, gnl|Hg17|chr3 (32386379-32386805) |
|
634-1054, gnl|Mm7|chr9 (114440842-114440401) |
|
pla (0.267344) |
|
tra (0.246184) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
mga (0.160205) |
|
eli (0.151814) |
|
lun (0.150489) |
|
ski (0.146735) |
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cst (0.140036) |
|
ute (0.132784) |
|
kid (0.129735) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
pla (0.267344) |
|
tra (0.246184) |
|
cmu (0.186393) |
|
rec (0.17307) |
|
mga (0.160205) |
|
eli (0.151814) |
|
lun (0.150489) |
|
ski (0.146735) |
|
cst (0.140036) |
|
ute (0.132784) |
|
kid (0.129735) |
|
thg (0.126791) |
|
pgl (0.118483) |
