Non-Coding RNA Search

Ss1.1-rtra32_l17.5

Sequence:


               
               TTTCTTGGAATTTACAGACTCTCCGGAGCACCTGTTATTGAATCTTTGCTGTTTTAACAA
CAGCTGTGGGCAGAGCCTCCTTGCAAAGGAGTTCCTGATGGGGATAAATTACATCCTCTC
CCTCGTTCTGGTCGGTTGGGTTTGGGATAGGGAGGAGGAGGAAGGAGAGGCTCGTTTTTG
AACTTCTGTCAATAAACTGTAAGAAAGTAACAGTACATCCTGAAACCATCAAGAAGAAAA
ATGTCGGTGACTTTGCATACCGATGTCGGTGATATTAAAATAGAAGTCTTCTGTGAGAGG
ACACCCAAAACCTGTGAAAATTTCTTGGCTCTTTGTGCCAGTAATTACTACAATGGCTGT
ATATTTCACAGAAATATCAAGGGCTTCATGGTTCAAACAGGAGATCCAACAGGTACTGGA
AGAGGAGGTAACAGTATCTGGGGCAAGAAATTTGAGGATGAATACAGTGAATATCTTAAG
CACAATGTTAGAGGTGTTGTATCTATGGCCAATAATGGTCCAAACACCAATGGATCTCAG
TTCTTCATCACCTATGGCAAGCAGCCACATCTGGACATGAAATACACGGTATTTGGAAAG
GTAATAGATGGTCTGGAGACTCTAGATGAACTGGAGAAGTTACCAGTAAATGAGAAGACA
TATCGACCTCTTAATGATGTACACATTAAGGACATAACTATTCATGCCAACCCATTTGCT
CAGTAGCTATAATAGACCCGGACAAATACTTGGCAAACTATGCAAGAACAGACCTATTAT
GGTTTGCCCAATTTTAATTATGTCAGAGGTTTCATCATCCTCTGCTTGTTTACAACTAAG
ATCTTATGTGAGCTGGTGGTACCAAGGGGAGCCAAACAGCTTTTACTCCTATTCTCATAA
CATATTCTTTACTATACCAGTTATCCAATGTATTTCCTGAAGCTTAATTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTGGAATTTACAGACTCTCCGGAGCACCTGTTATTGAATCTTTGCTGTTTTAACAA
CAGCTGTGGGCAGAGCCTCCTTGCAAAGGAGTTCCTGATGGGGATAAATTACATCCTCTC
CCTCGTTCTGGTCGGTTGGGTTTGGGATAGGGAGGAGGAGGAAGGAGAGGCTCGTTTTTG
AACTTCTGTCAATAAACTGTAAGAAAGTAACAGTACATCCTGAAACCATCAAGAAGAAAA
ATGTCGGTGACTTTGCATACCGATGTCGGTGATATTAAAATAGAAGTCTTCTGTGAGAGG
ACACCCAAAACCTGTGAAAATTTCTTGGCTCTTTGTGCCAGTAATTACTACAATGGCTGT
ATATTTCACAGAAATATCAAGGGCTTCATGGTTCAAACAGGAGATCCAACAGGTACTGGA
AGAGGAGGTAACAGTATCTGGGGCAAGAAATTTGAGGATGAATACAGTGAATATCTTAAG
CACAATGTTAGAGGTGTTGTATCTATGGCCAATAATGGTCCAAACACCAATGGATCTCAG
TTCTTCATCACCTATGGCAAGCAGCCACATCTGGACATGAAATACACGGTATTTGGAAAG
GTAATAGATGGTCTGGAGACTCTAGATGAACTGGAGAAGTTACCAGTAAATGAGAAGACA
TATCGACCTCTTAATGATGTACACATTAAGGACATAACTATTCATGCCAACCCATTTGCT
CAGTAGCTATAATAGACCCGGACAAATACTTGGCAAACTATGCAAGAACAGACCTATTAT
GGTTTGCCCAATTTTAATTATGTCAGAGGTTTCATCATCCTCTGCTTGTTTACAACTAAG
ATCTTATGTGAGCTGGTGGTACCAAGGGGAGCCAAACAGCTTTTACTCCTATTCTCATAA
CATATTCTTTACTATACCAGTTATCCAATGTATTTCCTGAAGCTTAATTAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62738560|pdb|1XYH|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62738560|pdb|1XYH|A

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               600-956, gnl|bosTau2|chr2 (50959473-50959814)
               

               
               600-956, gnl|Hg17|chr2 (201561750-201561394)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               600-956, gnl|bosTau2|chr2 (50959473-50959814)
               

               
               600-956, gnl|Hg17|chr2 (201561750-201561394)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               gul (0.355177)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	600-956, gnl\|bosTau2\|chr2 (50959473-50959814)
	600-956, gnl\|Hg17\|chr2 (201561750-201561394)

	gul (0.355177)
	fat (0.294855)
	liv (0.292569)
	spl (0.286369)
	tra (0.246184)
	mgp (0.230681)
	tes (0.207814)
	mga (0.160205)
	pla (0.133672)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)
	ldo (0.0970026)