Non-Coding RNA Search

Ss1.1-rtra33_g16.5

Sequence:


               
               ATTCAGTTCAATCAACAAAAATTACTTCCCATTTCATAAGTACAAAGTTGGGTTGTTTCG
GTTTACTACCAAGTTGAAAGAGCAACATTACACATGTTTACTTTTACTATTGTATATTAT
TTCAGCCCCTTCAGTAGTACCAAGTGAGTTTATTTTCTACTCTCATTAAAAAAAGATGCA
TTTAAATATTTATGGGCTTTTTTAAAAAAGCTTTTAAAAACTGAGGGTATCAGTGATAAT
TTGCAGAATATTGTCAAAGCTTTTTTTTGAAAAGCAAATTTTTGTGCCTGCCTATATGTA
AAGAATTTTATAAAGGGACTTGAACAGAGACCTCATTCTTTTCTACCTGTCATATGTCTT
AAGAGAAAAGCCTGTGGGTGGCCATATTTCTAGCGGTGTATCCTTTTAAAGTTGAAGATA
ACTTTAGGCAATTATGGAAACTATCCTCAAAGAGGTAAAAGTTATTCAGGGCTTTTCTCA
TTCAGTGTTTCACACACTAGTATCCATATTCCAGCGAAGATACAGAAGTGTTTTCACTAA
TTCTGTTCTTTTTCATTAGGTTGTGAAGGTTCACAATATGTTCCTTTAAATTCCTTATGA
GGGAATCACAGCATGTATATAATTCATTTTCTAGGTATAATAAAAGAATGTATAGCTCTT
TATTCTATGGAAATAAATTTCTGGAAGTTTACAACTTTTCTTGTAAATAAAAATATTGTA
AGGCTTTTTTTTTTTTTGGTTAAAAAAAAAAGTTAGCTTGTATAGTTCTGTCAGTTTCAG
ATTTCTCTCCTGTGTTGTGAATTGTGGGAAATGCTGACGATGCAAATGTGTCAAAGACTT
ACATGGCTGGGTGCAATATCAAAAATTTTTAAATGAAAATTGCTTTGGATAAATTATTTC
TATATCCTGTAAATCTGAGATTAACGTATATTTTTGTTTAAAAAAATAAAATGCTTTAGT
AATAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGTTCAATCAACAAAAATTACTTCCCATTTCATAAGTACAAAGTTGGGTTGTTTCG
GTTTACTACCAAGTTGAAAGAGCAACATTACACATGTTTACTTTTACTATTGTATATTAT
TTCAGCCCCTTCAGTAGTACCAAGTGAGTTTATTTTCTACTCTCATTAAAAAAAGATGCA
TTTAAATATTTATGGGCTTTTTTAAAAAAGCTTTTAAAAACTGAGGGTATCAGTGATAAT
TTGCAGAATATTGTCAAAGCTTTTTTTTGAAAAGCAAATTTTTGTGCCTGCCTATATGTA
AAGAATTTTATAAAGGGACTTGAACAGAGACCTCATTCTTTTCTACCTGTCATATGTCTT
AAGAGAAAAGCCTGTGGGTGGCCATATTTCTAGCGGTGTATCCTTTTAAAGTTGAAGATA
ACTTTAGGCAATTATGGAAACTATCCTCAAAGAGGTAAAAGTTATTCAGGGCTTTTCTCA
TTCAGTGTTTCACACACTAGTATCCATATTCCAGCGAAGATACAGAAGTGTTTTCACTAA
TTCTGTTCTTTTTCATTAGGTTGTGAAGGTTCACAATATGTTCCTTTAAATTCCTTATGA
GGGAATCACAGCATGTATATAATTCATTTTCTAGGTATAATAAAAGAATGTATAGCTCTT
TATTCTATGGAAATAAATTTCTGGAAGTTTACAACTTTTCTTGTAAATAAAAATATTGTA
AGGCTTTTTTTTTTTTTGGTTAAAAAAAAAAGTTAGCTTGTATAGTTCTGTCAGTTTCAG
ATTTCTCTCCTGTGTTGTGAATTGTGGGAAATGCTGACGATGCAAATGTGTCAAAGACTT
ACATGGCTGGGTGCAATATCAAAAATTTTTAAATGAAAATTGCTTTGGATAAATTATTTC
TATATCCTGTAAATCTGAGATTAACGTATATTTTTGTTTAAAAAAATAAAATGCTTTAGT
AATAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               472-600, + strand, RNAz p=0.938384

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-600, + strand, RNAz p=0.938384

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-849, gnl|bosTau2|chr24 (43055575-43056415)
               

               
               1-849, gnl|Hg17|chr18 (53465622-53464808)
               

               
               1-849, gnl|Mm7|chr18 (64919201-64917515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-849, gnl|bosTau2|chr24 (43055575-43056415)
               

               
               1-849, gnl|Hg17|chr18 (53465622-53464808)
               

               
               1-849, gnl|Mm7|chr18 (64919201-64917515)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               rec (0.865351)
               

               
               aor (0.781097)
               

               
               lin (0.436808)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.865351)
               

               
               aor (0.781097)
               

               
               lin (0.436808)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	1-849, gnl\|bosTau2\|chr24 (43055575-43056415)
	1-849, gnl\|Hg17\|chr18 (53465622-53464808)
	1-849, gnl\|Mm7\|chr18 (64919201-64917515)

	rec (0.865351)
	aor (0.781097)
	lin (0.436808)
	liv (0.292569)
	csk (0.281492)
	cty (0.20816)
	col (0.195008)
	sin (0.174948)
	mga (0.160205)
	pty (0.142714)
	pla (0.133672)
	bla (0.124347)
	tra (0.123092)
	eje (0.0988338)