Non-Coding RNA Search

Ss1.1-rtra33_k10.5

Sequence:


               
               CTGTGAGAGCTGCAAGTCATTGGCACTTCCATTGGCCAAAGTGCAACCCGCAAAGCTAAA
GAACTCTCCAATGAATAATTTAAGTCTATTACAGACNTCCTGAAAAATTCATCCTACTTC
TCTTTTTAAGAAACTACCTAGGACTCTCTTGGCCCCACTCTCCCCCACCCCATGAGCATG
GACAGGGGCCTCCTAACTAGAAACTCTGTTTTCTCTCTTAGAATTACCTCTCTGAACAGG
ACTTTGTCTCTGTGTTTGGCATCACAAGAGGGCAATTTGCTGCTCTGCCTGCCTGGAAAC
AGCTCCAGATGAAGAAAGAAAAGGGGCTTTTCTGAGGCAAACACACACATCTAGATATTG
CAAGACCCCGCAAGAGAGCCAACAGTGCCAATGTCAAGAAAGAATTTATCTACTGATTTC
TGCCCAACACCCAGCTACTCACCATAGATACAGTAGGGTCTTCAAATCACAGCATGTTCT
CCATTTTCTCATCCCTGCATTCCTTAGTTGTTACACGCCTAAAATGCTAACTACCCACTT
TTTAATTTTTGTGGCCTTCTGGCTAAAACTGCATGAATCTGGAGAAGTCAAAAATAACAG
AACAAAAAACCTAAGTTTAAAGTATTTAATGTTGGGGCAAGGACCTAAGTTTGTTTTAAA
ATTTAAGATGGGTATTTCCTGTTTAACCCACAAATCATTGAAGTTATTCACATATACACC
TTAAAGTCAAAATCTAAATGCTCAGATCCGTATGTGCCAGAGATTTTTTAAATTTTCAAA
TAAAGATACCCGTATGAGCAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGAGAGCTGCAAGTCATTGGCACTTCCATTGGCCAAAGTGCAACCCGCAAAGCTAAA
GAACTCTCCAATGAATAATTTAAGTCTATTACAGACNTCCTGAAAAATTCATCCTACTTC
TCTTTTTAAGAAACTACCTAGGACTCTCTTGGCCCCACTCTCCCCCACCCCATGAGCATG
GACAGGGGCCTCCTAACTAGAAACTCTGTTTTCTCTCTTAGAATTACCTCTCTGAACAGG
ACTTTGTCTCTGTGTTTGGCATCACAAGAGGGCAATTTGCTGCTCTGCCTGCCTGGAAAC
AGCTCCAGATGAAGAAAGAAAAGGGGCTTTTCTGAGGCAAACACACACATCTAGATATTG
CAAGACCCCGCAAGAGAGCCAACAGTGCCAATGTCAAGAAAGAATTTATCTACTGATTTC
TGCCCAACACCCAGCTACTCACCATAGATACAGTAGGGTCTTCAAATCACAGCATGTTCT
CCATTTTCTCATCCCTGCATTCCTTAGTTGTTACACGCCTAAAATGCTAACTACCCACTT
TTTAATTTTTGTGGCCTTCTGGCTAAAACTGCATGAATCTGGAGAAGTCAAAAATAACAG
AACAAAAAACCTAAGTTTAAAGTATTTAATGTTGGGGCAAGGACCTAAGTTTGTTTTAAA
ATTTAAGATGGGTATTTCCTGTTTAACCCACAAATCATTGAAGTTATTCACATATACACC
TTAAAGTCAAAATCTAAATGCTCAGATCCGTATGTGCCAGAGATTTTTTAAATTTTCAAA
TAAAGATACCCGTATGAGCAAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51247852|pdb|1UND|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51247852|pdb|1UND|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-397, + strand, RNAz p=0.667863

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-397, + strand, RNAz p=0.667863

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006576, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006576, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-804, gnl|bosTau2|chr5 (34366350-34365547)
               

               
               23-804, gnl|Hg17|chr12 (56478255-56477425)
               

               
               23-804, gnl|Mm7|chr10 (126517676-126518458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-804, gnl|bosTau2|chr5 (34366350-34365547)
               

               
               23-804, gnl|Hg17|chr12 (56478255-56477425)
               

               
               23-804, gnl|Mm7|chr10 (126517676-126518458)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	23-804, gnl\|bosTau2\|chr5 (34366350-34365547)
	23-804, gnl\|Hg17\|chr12 (56478255-56477425)
	23-804, gnl\|Mm7\|chr10 (126517676-126518458)