Ss1.1-rtra33_n2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATATGGCTGAACGTATATTACCAGCTGCTGCTAAATTTGCTCAGGACAGCTCACCAGA AACCAGGTATTATGGTCGAAAGATGCTTTTCCTCATGATGTGTCATCCTAACTTTGACAA AATGCTTGAAAAATATGTCCCATCTAAAGATTTGCCATATATTAAGGAGTCTATTAAAAG ------------GGGTGGGGGAGAGATACCACTAGATCCTCCTTCAGCGAAAGGAAGACG ATCTCATACTGGCAGTGTTGGAAATACCAGGTCATCAACTGTTTATAGGGTTTTACCTTT TTTTCACTTTAGAGAGGTAACTGAAATTCGTGAATTTACCAAAAAATCAGTTCCCCGCAA TTCCTCAAAAAGTGCTGAGTACATTAAAGTCATAACAGGTTTATTAAATGCAAAAGACTT TCGGGATCGTATTAATGGGATCAAGCAGCTTTTATCAGATACAGAAAACAATCAAGAGCT TGTTGTTGGAAATATTGTGAAGGTAAGGACTGTAAAAATTAATTTTCATTTTTAATTGTT GGTTAACAAAGTTCTGGTGGCTCTAGAAACAATGCATAAAATGATTCCTTTGATTAGAGA CAACTTATCTCCTATAATCAACATGCTAATTCCAGCAATAGTAGATAACAATCTGAATTC CAAGAATCCAGGCATCTATGCTGCTGCCACAAATGTTATTCAGGCACTGATTCAGCATGT AGATAATTACTTACTTCTGCAACCATTTTGCACAAAAGCTCAGTTTTTAAATGGAAAGGC CAAACAAGATATGACTGAAAAGCTTGCTGATATTGTTACAGAACTTTATCAAAGGAAGCC CCATGCCACAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATATGGCTGAACGTATATTACCAGCTGCTGCTAAATTTGCTCAGGACAGCTCACCAGA AACCAGGTATTATGGTCGAAAGATGCTTTTCCTCATGATGTGTCATCCTAACTTTGACAA AATGCTTGAAAAATATGTCCCATCTAAAGATTTGCCATATATTAAGGAGTCTATTAAAAG ------------GGGTGGGGGAGAGATACCACTAGATCCTCCTTCAGCGAAAGGAAGACG ATCTCATACTGGCAGTGTTGGAAATACCAGGTCATCAACTGTTTATAGGGTTTTACCTTT TTTTCACTTTAGAGAGGTAACTGAAATTCGTGAATTTACCAAAAAATCAGTTCCCCGCAA TTCCTCAAAAAGTGCTGAGTACATTAAAGTCATAACAGGTTTATTAAATGCAAAAGACTT TCGGGATCGTATTAATGGGATCAAGCAGCTTTTATCAGATACAGAAAACAATCAAGAGCT TGTTGTTGGAAATATTGTGAAGGTAAGGACTGTAAAAATTAATTTTCATTTTTAATTGTT GGTTAACAAAGTTCTGGTGGCTCTAGAAACAATGCATAAAATGATTCCTTTGATTAGAGA CAACTTATCTCCTATAATCAACATGCTAATTCCAGCAATAGTAGATAACAATCTGAATTC CAAGAATCCAGGCATCTATGCTGCTGCCACAAATGTTATTCAGGCACTGATTCAGCATGT AGATAATTACTTACTTCTGCAACCATTTTGCACAAAAGCTCAGTTTTTAAATGGAAAGGC CAAACAAGATATGACTGAAAAGCTTGCTGATATTGTTACAGAACTTTATCAAAGGAAGCC CCATGCCACAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 278-370, - strand, RNAz p=0.939079 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 278-370, - strand, RNAz p=0.939079 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 65-180, gnl|bosTau2|chr21 (37166884-37166999) | |
| 65-180, gnl|canFam2|chr8 (25487891-25487996) | |
| 65-180, gnl|danRer3|chrUn (17619832-17619937) | |
| 65-180, gnl|dasNov1|scaffold_97307 (1419-1314) | |
| 65-180, gnl|echTel1|scaffold_320543 (81056-81161) | |
| 65-180, gnl|fr1|chrUn (59908733-59908628) | |
| 65-180, gnl|galGal2|chr5 (55490059-55489954) | |
| 65-180, gnl|hg17|chr14 (44591387-44591492) | |
| 65-180, gnl|Hg17|chr14 (44591387-44591502) | |
| 65-180, gnl|loxAfr1|scaffold_13146 (30396-30291) | |
| 65-180, gnl|mm7|chr12 (62950201-62950306) | |
| 65-180, gnl|Mm7|chr12 (62950201-62950316) | |
| 65-180, gnl|monDom2|scaffold_8 (66730945-66730840) | |
| 65-180, gnl|oryCun1|scaffold_193613 (3097-2992) | |
| 65-180, gnl|panTro1|chr15 (43847825-43847930) | |
| 65-180, gnl|rheMac2|chr7 (108222099-108222204) | |
| 65-180, gnl|rn3|chr6 (86372632-86372737) | |
| 65-180, gnl|tetNig1|chr10 (3721251-3721146) | |
| 65-180, gnl|xenTro1|scaffold_1227 (162783-162888) | |
| 278-542, gnl|bosTau2|chr21 (37171480-37171744) | |
| 278-542, gnl|Hg17|chr14 (44605471-44605750) | |
| 278-542, gnl|Mm7|chr12 (62955523-62955781) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-180, gnl|bosTau2|chr21 (37166884-37166999) | |
| 65-180, gnl|canFam2|chr8 (25487891-25487996) | |
| 65-180, gnl|danRer3|chrUn (17619832-17619937) | |
| 65-180, gnl|dasNov1|scaffold_97307 (1419-1314) | |
| 65-180, gnl|echTel1|scaffold_320543 (81056-81161) | |
| 65-180, gnl|fr1|chrUn (59908733-59908628) | |
| 65-180, gnl|galGal2|chr5 (55490059-55489954) | |
| 65-180, gnl|hg17|chr14 (44591387-44591492) | |
| 65-180, gnl|Hg17|chr14 (44591387-44591502) | |
| 65-180, gnl|loxAfr1|scaffold_13146 (30396-30291) | |
| 65-180, gnl|mm7|chr12 (62950201-62950306) | |
| 65-180, gnl|Mm7|chr12 (62950201-62950316) | |
| 65-180, gnl|monDom2|scaffold_8 (66730945-66730840) | |
| 65-180, gnl|oryCun1|scaffold_193613 (3097-2992) | |
| 65-180, gnl|panTro1|chr15 (43847825-43847930) | |
| 65-180, gnl|rheMac2|chr7 (108222099-108222204) | |
| 65-180, gnl|rn3|chr6 (86372632-86372737) | |
| 65-180, gnl|tetNig1|chr10 (3721251-3721146) | |
| 65-180, gnl|xenTro1|scaffold_1227 (162783-162888) | |
| 278-542, gnl|bosTau2|chr21 (37171480-37171744) | |
| 278-542, gnl|Hg17|chr14 (44605471-44605750) | |
| 278-542, gnl|Mm7|chr12 (62955523-62955781) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| tra (0.123092) |