Non-Coding RNA Search

Ss1.1-rtra34_c21.5

Sequence:


               
               AAACTGCGACAGTGCTATTCACTGAAGGGCTTGTCTGCATCATCTGTCAACAAAACATCA
CCCGAAAGTTGTCATCTCAGACAAAACCGTCAGCCAGGAAATGTTCCTTCTGGAAGATCA
TTGGTGAGGGTCTGTCTGCAGAAGCCTCAGGGGTTAATTTTCACTCAAGTTCTTAAAGGG
CAGTGATTCATTAAACTGGTTTTAAAAATGTACAAATTCCCCTTCCTCCAATATTTGTCA
GGCTGCCTGCAGCTTAATATGCGATATTCTGCCAAACAGCTGCCAGGGCTACAATTAATG
AAGCAGAACTTAAGACTTCACAGTGTGTAGTCAGGATCTAAATTAGCATCAGCACTTTGA
CATTCATTACACGTGTTTGAGGGGAACGAAAAACACGTATTTCTGGTATGTTTCACCGAT
CCCAACGCCTTCCAATCTGGACACGATGGGCCTGCCTCAGCTGATGGTCCCACGTGTCAT
GAAAGTAGGTGGGCATCACCTGTCTCTGTTTAGGTCCAATATGGAGCCTCTGCCCAACAG
CAACAGCATCAGGTGGCTCCAGACGCCGGCAATTTGGATCCTGCACCCAAAAAGCTGAGA
CCGTCTTCGCCGCCTTCCCTGTAGCTTAGACGTCAGATGTTCCACAATTACTGTCACAGT
GTTTACATTGTGTTGCTACTTATATTTTTTGAGTTAAAATTATGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTGCGACAGTGCTATTCACTGAAGGGCTTGTCTGCATCATCTGTCAACAAAACATCA
CCCGAAAGTTGTCATCTCAGACAAAACCGTCAGCCAGGAAATGTTCCTTCTGGAAGATCA
TTGGTGAGGGTCTGTCTGCAGAAGCCTCAGGGGTTAATTTTCACTCAAGTTCTTAAAGGG
CAGTGATTCATTAAACTGGTTTTAAAAATGTACAAATTCCCCTTCCTCCAATATTTGTCA
GGCTGCCTGCAGCTTAATATGCGATATTCTGCCAAACAGCTGCCAGGGCTACAATTAATG
AAGCAGAACTTAAGACTTCACAGTGTGTAGTCAGGATCTAAATTAGCATCAGCACTTTGA
CATTCATTACACGTGTTTGAGGGGAACGAAAAACACGTATTTCTGGTATGTTTCACCGAT
CCCAACGCCTTCCAATCTGGACACGATGGGCCTGCCTCAGCTGATGGTCCCACGTGTCAT
GAAAGTAGGTGGGCATCACCTGTCTCTGTTTAGGTCCAATATGGAGCCTCTGCCCAACAG
CAACAGCATCAGGTGGCTCCAGACGCCGGCAATTTGGATCCTGCACCCAAAAAGCTGAGA
CCGTCTTCGCCGCCTTCCCTGTAGCTTAGACGTCAGATGTTCCACAATTACTGTCACAGT
GTTTACATTGTGTTGCTACTTATATTTTTTGAGTTAAAATTATGTATG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               13-254, gnl|bosTau2|chr13 (40911932-40911701)
               

               
               13-254, gnl|canFam2|chr24 (44562689-44562533)
               

               
               13-254, gnl|dasNov1|scaffold_1805 (152670-152825)
               

               
               13-254, gnl|hg17|chr10 (27678240-27678392)
               

               
               13-254, gnl|Hg17|chr20 (54374946-54375164)
               

               
               13-254, gnl|loxAfr1|scaffold_47239 (14230-14367)
               

               
               13-254, gnl|mm7|chr2 (172146012-172145871)
               

               
               13-254, gnl|oryCun1|scaffold_211767 (8585-8451)
               

               
               13-254, gnl|panTro1|chr8 (27998911-27999063)
               

               
               13-254, gnl|rheMac2|chr9 (27367275-27367427)
               

               
               13-254, gnl|rn3|chr3 (163174320-163174173)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-254, gnl|bosTau2|chr13 (40911932-40911701)
               

               
               13-254, gnl|canFam2|chr24 (44562689-44562533)
               

               
               13-254, gnl|dasNov1|scaffold_1805 (152670-152825)
               

               
               13-254, gnl|hg17|chr10 (27678240-27678392)
               

               
               13-254, gnl|Hg17|chr20 (54374946-54375164)
               

               
               13-254, gnl|loxAfr1|scaffold_47239 (14230-14367)
               

               
               13-254, gnl|mm7|chr2 (172146012-172145871)
               

               
               13-254, gnl|oryCun1|scaffold_211767 (8585-8451)
               

               
               13-254, gnl|panTro1|chr8 (27998911-27999063)
               

               
               13-254, gnl|rheMac2|chr9 (27367275-27367427)
               

               
               13-254, gnl|rn3|chr3 (163174320-163174173)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

	13-254, gnl\|bosTau2\|chr13 (40911932-40911701)
	13-254, gnl\|canFam2\|chr24 (44562689-44562533)
	13-254, gnl\|dasNov1\|scaffold_1805 (152670-152825)
	13-254, gnl\|hg17\|chr10 (27678240-27678392)
	13-254, gnl\|Hg17\|chr20 (54374946-54375164)
	13-254, gnl\|loxAfr1\|scaffold_47239 (14230-14367)
	13-254, gnl\|mm7\|chr2 (172146012-172145871)
	13-254, gnl\|oryCun1\|scaffold_211767 (8585-8451)
	13-254, gnl\|panTro1\|chr8 (27998911-27999063)
	13-254, gnl\|rheMac2\|chr9 (27367275-27367427)
	13-254, gnl\|rn3\|chr3 (163174320-163174173)

	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	rec (0.17307)
	fat (0.147427)
	spl (0.143184)
	pla (0.133672)
	tra (0.123092)