Non-Coding RNA Search

Ss1.1-rtra35_c22.5

Sequence:


               
               CAAGGGGTTTCAGCATAATTCAGAATGTGAAAAAATTACCTTAGTTCACATCTTCCGATT
ACTAAAAATCCCACACATTCAAAATGAATAATAATACTTTGTCTTTTACGTCCTTAAATA
ACTGAAGTCAAGCACAGAAAAAGAATTTATAGAGATTTTCATAAGAAAGTCAAAGTTCTA
AAAATTGTTTGTTGTTGAACTAAAACAATATCAGTAACAAAACAATCTTTTCATAAAATG
TCAGTGATGAAAGATCTTTTCATCAAAATTAGAAGTAGTGAGAATCAGTGTTAGTTATAC
CTATACCAAAGTAAACATTAAAGAGACGTATCATGCAATTTCAAAGAATGCTTTCATATT
ATTTCTTAACCTGACATCCTTATCCTTATTGCAAGCAACACGTAAAGATTGGCTCACTAC
TCCATAAATTAATTGAATTCCTGGTAGGGAAATTGACTCATTTTGTTTTTCCTAAATTAG
CTGAGATCTTGTAAAACATGACTTCCATTTAAAGAATCTAGGTACGGTTCAATTGAAAAA
ACGACACCATAAAGAAAAAAAGTCATGTAGTGATAGAACAGTCTGCTTTATTAGAACCAG
GTTAAAAGCTGTTTGTTGCCTAATGGAGTAGAAGTTGCTGAGGTCAACAAGTAGACTGAG
GTTTGGCATAATATATGCCCACTCTTTATTGTCTAATTATATTCTTTTGACAACAGACAG
CATTTATCGGAGCGTTAATTCAAATGAGAGGTTGGGCTATCAAGATGTGTTGATTTGAAA
CGTAACTGAATGAGCCCTGAATAAAGTCTGACTTTTCCTGGCCCTAGTGTTTTGCAGGTT
GGCTATTCCCATTTATCAGCCCCATCACTCCATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGGGTTTCAGCATAATTCAGAATGTGAAAAAATTACCTTAGTTCACATCTTCCGATT
ACTAAAAATCCCACACATTCAAAATGAATAATAATACTTTGTCTTTTACGTCCTTAAATA
ACTGAAGTCAAGCACAGAAAAAGAATTTATAGAGATTTTCATAAGAAAGTCAAAGTTCTA
AAAATTGTTTGTTGTTGAACTAAAACAATATCAGTAACAAAACAATCTTTTCATAAAATG
TCAGTGATGAAAGATCTTTTCATCAAAATTAGAAGTAGTGAGAATCAGTGTTAGTTATAC
CTATACCAAAGTAAACATTAAAGAGACGTATCATGCAATTTCAAAGAATGCTTTCATATT
ATTTCTTAACCTGACATCCTTATCCTTATTGCAAGCAACACGTAAAGATTGGCTCACTAC
TCCATAAATTAATTGAATTCCTGGTAGGGAAATTGACTCATTTTGTTTTTCCTAAATTAG
CTGAGATCTTGTAAAACATGACTTCCATTTAAAGAATCTAGGTACGGTTCAATTGAAAAA
ACGACACCATAAAGAAAAAAAGTCATGTAGTGATAGAACAGTCTGCTTTATTAGAACCAG
GTTAAAAGCTGTTTGTTGCCTAATGGAGTAGAAGTTGCTGAGGTCAACAAGTAGACTGAG
GTTTGGCATAATATATGCCCACTCTTTATTGTCTAATTATATTCTTTTGACAACAGACAG
CATTTATCGGAGCGTTAATTCAAATGAGAGGTTGGGCTATCAAGATGTGTTGATTTGAAA
CGTAACTGAATGAGCCCTGAATAAAGTCTGACTTTTCCTGGCCCTAGTGTTTTGCAGGTT
GGCTATTCCCATTTATCAGCCCCATCACTCCATAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               610-729, - strand, RNAz p=0.776723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-729, - strand, RNAz p=0.776723

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-876, gnl|bosTau2|chr12 (891683-892493)
               

               
               76-876, gnl|Hg17|chr13 (57200610-57201295)
               

               
               76-876, gnl|Mm7|chr14 (79212727-79213761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-876, gnl|bosTau2|chr12 (891683-892493)
               

               
               76-876, gnl|Hg17|chr13 (57200610-57201295)
               

               
               76-876, gnl|Mm7|chr14 (79212727-79213761)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               ece (0.45861)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)

	76-876, gnl\|bosTau2\|chr12 (891683-892493)
	76-876, gnl\|Hg17\|chr13 (57200610-57201295)
	76-876, gnl\|Mm7\|chr14 (79212727-79213761)

	ece (0.45861)
	tra (0.246184)
	mgp (0.230681)
	lin (0.145603)
	ste (0.135208)
	ebs (0.118301)