Non-Coding RNA Search

Ss1.1-rtra35_f23.5

Sequence:


               
               GGGCAACAGCACTATGACCCAAAAACTGGAATCTTTACCTGCAGGATACCTGGAATCTAT
TACTTCTCCTACCACATTCACGTGAAGGGGACCCATGCTTGGGTGGGCCTGTATAAAAAT
GGCACCCCTGTCATGTACACCTATGATGAATATGTCAAAGGCTACCTGGATCAGGCTTCA
GGGAGTGCCATCCTTGATCTCACAGATAATGACCAGGTATGGCTCCAGCTGCCCAACGCT
GGGTCGAACGGGCTGTACTCCTCTGAGTACGTCCACTCCTCTTTCTCAGGATTCCTAGTG
GCTCCAATGTGAGCCCATTCCTGCCCAGCTAATATAAATCTGCATGAAAAGGTGTTCCCC
AGCTCCACCCCGCCCCACACAATGCATAAGGAGGTAGGCTGAAAAAAATGCTGACTCCTT
GTAGTTCTCCAAAATACAGACCTGAGCTTTCAAACACAGTGAAGTATGTGAAGTTCCTCT
TGAGTTTCTAGTCAGCAGTCCTGAGTCTCTTTAAAGTGTTCTGTGAACTCCTTCAGTATT
TAAAAATGTCACCATGAAAGCCTTGCTCAGCGAAAAAAATAAAATGATTGCAAAAGACCC
TGAAACATGATGCTAAATTATGCTAAATTTGATTTCGGAAATTCAGTATTTCCTTTTAAA
ATGAGCCTGTTTCTAAAAATTCAACGGAGAATTTCTAGGAAACATTCAGGAAGTACCATG
TTTCTTTGTGGGACTCAAATACTTGAATATTCAGATTTAAAAGACACTGTACACCTTAAG
ATCTTTCTGATGGTGCATTATTCAAAGGCTTAAAATGGCCCCCTTCATCAATATCTATTC
AAGGGTACAGGTGCATAGAAGACTTTCTACAGCTCTCATAAAAAACCCCAAAATATTATG
TTAAAAATAATCTGAAAGGCAAGGTGCTTCAGTCATGAACTTTCTCAAACTTTTCTGTGA
TTGGAGAAAAGCCTTCAATATACCCTTCACTATTTGGAATGGGTGCCTGACCTATTTATT
TACTGGACACAAGGGTGATTAATTTACTTAAATTCCTTATTGAGTCTCAAGTAATATGAT
TTTGTGGATTTACAGAGCATGAGCATATGTACCTTGGGCCTCCCATTGCAGTGAAGTTGT
AATCAATGTTAAGAGTTTCAAAGCCTGACTAGAAGTGAAAAGATATTATTTATTTATGCT
CTGTACTGTATTTTTATGTTGCTGTAGCTGTGCCTCAACAAAATGTTTTACCTACCCCTT
ATTTACAGTGCAATAAAATGACATCAATTGATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAACAGCACTATGACCCAAAAACTGGAATCTTTACCTGCAGGATACCTGGAATCTAT
TACTTCTCCTACCACATTCACGTGAAGGGGACCCATGCTTGGGTGGGCCTGTATAAAAAT
GGCACCCCTGTCATGTACACCTATGATGAATATGTCAAAGGCTACCTGGATCAGGCTTCA
GGGAGTGCCATCCTTGATCTCACAGATAATGACCAGGTATGGCTCCAGCTGCCCAACGCT
GGGTCGAACGGGCTGTACTCCTCTGAGTACGTCCACTCCTCTTTCTCAGGATTCCTAGTG
GCTCCAATGTGAGCCCATTCCTGCCCAGCTAATATAAATCTGCATGAAAAGGTGTTCCCC
AGCTCCACCCCGCCCCACACAATGCATAAGGAGGTAGGCTGAAAAAAATGCTGACTCCTT
GTAGTTCTCCAAAATACAGACCTGAGCTTTCAAACACAGTGAAGTATGTGAAGTTCCTCT
TGAGTTTCTAGTCAGCAGTCCTGAGTCTCTTTAAAGTGTTCTGTGAACTCCTTCAGTATT
TAAAAATGTCACCATGAAAGCCTTGCTCAGCGAAAAAAATAAAATGATTGCAAAAGACCC
TGAAACATGATGCTAAATTATGCTAAATTTGATTTCGGAAATTCAGTATTTCCTTTTAAA
ATGAGCCTGTTTCTAAAAATTCAACGGAGAATTTCTAGGAAACATTCAGGAAGTACCATG
TTTCTTTGTGGGACTCAAATACTTGAATATTCAGATTTAAAAGACACTGTACACCTTAAG
ATCTTTCTGATGGTGCATTATTCAAAGGCTTAAAATGGCCCCCTTCATCAATATCTATTC
AAGGGTACAGGTGCATAGAAGACTTTCTACAGCTCTCATAAAAAACCCCAAAATATTATG
TTAAAAATAATCTGAAAGGCAAGGTGCTTCAGTCATGAACTTTCTCAAACTTTTCTGTGA
TTGGAGAAAAGCCTTCAATATACCCTTCACTATTTGGAATGGGTGCCTGACCTATTTATT
TACTGGACACAAGGGTGATTAATTTACTTAAATTCCTTATTGAGTCTCAAGTAATATGAT
TTTGTGGATTTACAGAGCATGAGCATATGTACCTTGGGCCTCCCATTGCAGTGAAGTTGT
AATCAATGTTAAGAGTTTCAAAGCCTGACTAGAAGTGAAAAGATATTATTTATTTATGCT
CTGTACTGTATTTTTATGTTGCTGTAGCTGTGCCTCAACAAAATGTTTTACCTACCCCTT
ATTTACAGTGCAATAAAATGACATCAATTGATAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14456423|gb|AAG38645.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14456423|gb|AAG38645.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-201, + strand, RNAz p=0.983546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, + strand, RNAz p=0.983546

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000493, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000493, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1292, gnl|bosTau2|chr9 (18617820-18619102)
               

               
               3-1292, gnl|Hg17|chr6 (116548238-116546881)
               

               
               3-1292, gnl|Mm7|chr10 (34176411-34177724)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1292, gnl|bosTau2|chr9 (18617820-18619102)
               

               
               3-1292, gnl|Hg17|chr6 (116548238-116546881)
               

               
               3-1292, gnl|Mm7|chr10 (34176411-34177724)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tra (2.33875)
               

               
               nca (1.36874)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (2.33875)
               

               
               nca (1.36874)

	3-1292, gnl\|bosTau2\|chr9 (18617820-18619102)
	3-1292, gnl\|Hg17\|chr6 (116548238-116546881)
	3-1292, gnl\|Mm7\|chr10 (34176411-34177724)