Non-Coding RNA Search

Ss1.1-ruio01_k18.5

Sequence:


               
               ATTAAAGATCGAACATTTCTGGGAGGCAGCGTCCACTGGGAAAATGGTCCTTCAGCTCAA
ACAGGAGCTGGAACTTATGCAGAAGAGTAAAGAAGAAGCCTACATAATGGCTGATGCATT
CAGAATTGCCTTTGAGCAACAATTAATGAGGAAAAATGATCAGGCACTAAGATTGACACA
AATGGATAAAATGTGTAAGAGAGCAACAAAATGGATAAATTGGAAGCACCTTAAAGAGGA
TGGGTTACCATCACAAAGGAGTAAGAAGAGCTTAGGGCAGAAATTGCTGGCTATGCTCCC
TTCAGAAAACAGTTCTAAGAGTACTGATGAGGATGATGCTCGGGAAGTCTTCAAAATGCT
GACAGATTTGTTAAATGATAAAGAAGAAGCTCTGGCTCATCAAAGAAAAGTTAGTTACAT
GCTTGCTCGGGCTTTGGAAGACAAAGACACCACCTCAAAAGAGAATAAAGAAAAAAATCC
AGTGAAAGACATTTTGCCATTAAAAAAACCCTGGCAGAAAACTTCAGAATTTCCCCTTTT
GCGTGATCCTGTACATTCAGATATTCAAATTTTTAATTCTGCAAGCTGCATTTGTTCAGT
TAAGCACTGTATTAAAGATCAAAACTATACAAGGACTCTTAAAAGATCCTGTTCTTTGCC
ATCAAATATCATGTACTGAAGACAAACCAGTTGAAATTAGAACTGAGAACTATGTACATC
AAGACTTTGAAAAGGGACATGTAAATGTTGGTACTTCGGAAGTTGCAGGTTTTCCAGGTA
TTTCTAAAATTTAGGAGGCAGCTTAAATAAATGTTTTCTACAAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAGATCGAACATTTCTGGGAGGCAGCGTCCACTGGGAAAATGGTCCTTCAGCTCAA
ACAGGAGCTGGAACTTATGCAGAAGAGTAAAGAAGAAGCCTACATAATGGCTGATGCATT
CAGAATTGCCTTTGAGCAACAATTAATGAGGAAAAATGATCAGGCACTAAGATTGACACA
AATGGATAAAATGTGTAAGAGAGCAACAAAATGGATAAATTGGAAGCACCTTAAAGAGGA
TGGGTTACCATCACAAAGGAGTAAGAAGAGCTTAGGGCAGAAATTGCTGGCTATGCTCCC
TTCAGAAAACAGTTCTAAGAGTACTGATGAGGATGATGCTCGGGAAGTCTTCAAAATGCT
GACAGATTTGTTAAATGATAAAGAAGAAGCTCTGGCTCATCAAAGAAAAGTTAGTTACAT
GCTTGCTCGGGCTTTGGAAGACAAAGACACCACCTCAAAAGAGAATAAAGAAAAAAATCC
AGTGAAAGACATTTTGCCATTAAAAAAACCCTGGCAGAAAACTTCAGAATTTCCCCTTTT
GCGTGATCCTGTACATTCAGATATTCAAATTTTTAATTCTGCAAGCTGCATTTGTTCAGT
TAAGCACTGTATTAAAGATCAAAACTATACAAGGACTCTTAAAAGATCCTGTTCTTTGCC
ATCAAATATCATGTACTGAAGACAAACCAGTTGAAATTAGAACTGAGAACTATGTACATC
AAGACTTTGAAAAGGGACATGTAAATGTTGGTACTTCGGAAGTTGCAGGTTTTCCAGGTA
TTTCTAAAATTTAGGAGGCAGCTTAAATAAATGTTTTCTACAAGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28460648|dbj|BAC57451.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28460648|dbj|BAC57451.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               124-243, + strand, RNAz p=0.538006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-243, + strand, RNAz p=0.538006

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-243, gnl|bosTau2|chr20 (7219629-7219823)
               


               
               370-827, gnl|bosTau2|chr20 (7223958-7224420)
               

               
               370-827, gnl|Hg17|chr5 (68614618-68614162)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-243, gnl|bosTau2|chr20 (7219629-7219823)
               


               
               370-827, gnl|bosTau2|chr20 (7223958-7224420)
               

               
               370-827, gnl|Hg17|chr5 (68614618-68614162)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               aor (0.390549)
               

               
               vin (0.332557)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

	49-243, gnl\|bosTau2\|chr20 (7219629-7219823)

	370-827, gnl\|bosTau2\|chr20 (7223958-7224420)
	370-827, gnl\|Hg17\|chr5 (68614618-68614162)

	aor (0.390549)
	vin (0.332557)
	lyg (0.266205)
	sug (0.254582)
	pan (0.23596)
	tes (0.207814)
	sag (0.182715)
	rec (0.17307)
	cki (0.165235)
	fat (0.147427)
	pty (0.142714)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)