Ss1.1-ruio02_c15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAGAAGACGGCGGTTTGGCGGCCTTTCGCGGCCAAAAGGCCTTTTGCTTTTGCGGAG ATGCGGCATTCCAAAAGAACTCACTGCCCTGATTGGGATAGCAGAGAAAGCTGGGGACAT GAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCCCACAGTAGTACACAAGAGAAC AGACATTGTAAACCACATCACCAGTTTAAAGAATCTGATTGTCATTATTTAGAAGCAAGG TCCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGATGAATACAGAAATGACTAC TGCGAAAGATATGTTCCTAGACATTATCACAGAGACATTGAAAGCAGTTATCGAATCCAT TGCAGTAAATCTTCAGTCCGAAGCAGGAGAAGCAGTCTTAAAAGGAAACGTAATAGACAC TGTTCAAGTCATCAGTCACGTTCGAAGAGCCACCGAAGGAAAAGATCCTTCATTGTTTGA ATAACTGATAATTTATTCTCAGGTTCTTACACTTCTTTCTTCCCCCTCAATTTAGATGAA ATCGTGGACACTTTGGGTGAAGGGGCCTTTGGCAAAGTTGTAGAGTGCATTGATCATGGC ATGGATGGCATGCATGTAGCAGTGAAAATTGTAAAAAATGTGGGTCGATATCGTGAAGCA GCTCGTTCAGAAATCCAAGTATTGGAGCATTTAAATAGTACTGATCCCAATAGTGTCTTC CGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAA CTACTGGGACTTAGTACCTATGATTTCATTAAAGAAAATAGCTTTCTGCCATTTCAAATT GACCACATCAGGCAAATGGCATATCAGATCTGTCAGTCAATAAATTTTCTGCATCATAAT AAATTAACCCATACAGATCTGAAGCCTGAAAATATTTTATTTGTGAAGTCTGACTATGTA GTCAAATATAATTCTAAAATGAAACGTGATGAACGCACACTGAAAAACACAGATATCAAA GTTGTTGATTTTGGAAGTGCAACATACGATGATGAACATCATAGTACTTTGGTATCTACA CGGCATTACAGAGCCCCAGAGGTCATTTTAGCTTTAGGTTGGTCTCAGCCTTGTGATGTT TGGAGCATAGGTTGCATTCTTATTGAATATTACCTTGGTTTCACAGTCTTTCAGACTCAT GATAGTAAAGAGCACCTGGCAATGATGGAACGAATATTAGGACCCATACCAACACACATG ATTCAGAAAACAAGAAAACGCAAGTATTTTCATCATAACCAGCTAGATTGGGATGAACAT AGTTCTGCTGGTAGATATGTTAGGAGACGCTGCAAACCATTAAAGGAGTTTATGCTTTGT CATGATGAAGAACATGAGAAACTGTTTGACCTGGTTCGAAGAATGTTAGAATATGATCCT GTGAAAAGAATTACCTTGGATGAAGCATTGCAGCATCCTTTCTTTGACTTATTAAAAAAG AAATGAAATGGAAATCAGTGGTCTTACTATACTTCTCTAGAAGAGATTACTTAAGACTGT GTCAGTCAACTCTAAACATTCTAATATTTTTGTAAACATTAAATTATTTTGTACAGTTAA GTGTAAATACTGTATGTTTTGTATCAATAGCATAATTATCTTGTTAAGCAAATATGGTCT TGATAATGAATGAAATATAAAAGCTGAAATTAATTTTCCTTTTTTGAGATTAATTACCAT TTTTAAAGACCTTTGGAATATCCTTTGTGTCCAGTGATAAAATGTGATTGATCTTGTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAGAAGACGGCGGTTTGGCGGCCTTTCGCGGCCAAAAGGCCTTTTGCTTTTGCGGAG ATGCGGCATTCCAAAAGAACTCACTGCCCTGATTGGGATAGCAGAGAAAGCTGGGGACAT GAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCCCACAGTAGTACACAAGAGAAC AGACATTGTAAACCACATCACCAGTTTAAAGAATCTGATTGTCATTATTTAGAAGCAAGG TCCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGATGAATACAGAAATGACTAC TGCGAAAGATATGTTCCTAGACATTATCACAGAGACATTGAAAGCAGTTATCGAATCCAT TGCAGTAAATCTTCAGTCCGAAGCAGGAGAAGCAGTCTTAAAAGGAAACGTAATAGACAC TGTTCAAGTCATCAGTCACGTTCGAAGAGCCACCGAAGGAAAAGATCCTTCATTGTTTGA ATAACTGATAATTTATTCTCAGGTTCTTACACTTCTTTCTTCCCCCTCAATTTAGATGAA ATCGTGGACACTTTGGGTGAAGGGGCCTTTGGCAAAGTTGTAGAGTGCATTGATCATGGC ATGGATGGCATGCATGTAGCAGTGAAAATTGTAAAAAATGTGGGTCGATATCGTGAAGCA GCTCGTTCAGAAATCCAAGTATTGGAGCATTTAAATAGTACTGATCCCAATAGTGTCTTC CGATGTGTCCAGATGCTAGAATGGTTTGATCATCATGGTCATGTTTGTATTGTGTTTGAA CTACTGGGACTTAGTACCTATGATTTCATTAAAGAAAATAGCTTTCTGCCATTTCAAATT GACCACATCAGGCAAATGGCATATCAGATCTGTCAGTCAATAAATTTTCTGCATCATAAT AAATTAACCCATACAGATCTGAAGCCTGAAAATATTTTATTTGTGAAGTCTGACTATGTA GTCAAATATAATTCTAAAATGAAACGTGATGAACGCACACTGAAAAACACAGATATCAAA GTTGTTGATTTTGGAAGTGCAACATACGATGATGAACATCATAGTACTTTGGTATCTACA CGGCATTACAGAGCCCCAGAGGTCATTTTAGCTTTAGGTTGGTCTCAGCCTTGTGATGTT TGGAGCATAGGTTGCATTCTTATTGAATATTACCTTGGTTTCACAGTCTTTCAGACTCAT GATAGTAAAGAGCACCTGGCAATGATGGAACGAATATTAGGACCCATACCAACACACATG ATTCAGAAAACAAGAAAACGCAAGTATTTTCATCATAACCAGCTAGATTGGGATGAACAT AGTTCTGCTGGTAGATATGTTAGGAGACGCTGCAAACCATTAAAGGAGTTTATGCTTTGT CATGATGAAGAACATGAGAAACTGTTTGACCTGGTTCGAAGAATGTTAGAATATGATCCT GTGAAAAGAATTACCTTGGATGAAGCATTGCAGCATCCTTTCTTTGACTTATTAAAAAAG AAATGAAATGGAAATCAGTGGTCTTACTATACTTCTCTAGAAGAGATTACTTAAGACTGT GTCAGTCAACTCTAAACATTCTAATATTTTTGTAAACATTAAATTATTTTGTACAGTTAA GTGTAAATACTGTATGTTTTGTATCAATAGCATAATTATCTTGTTAAGCAAATATGGTCT TGATAATGAATGAAATATAAAAGCTGAAATTAATTTTCCTTTTTTGAGATTAATTACCAT TTTTAAAGACCTTTGGAATATCCTTTGTGTCCAGTGATAAAATGTGATTGATCTTGTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 964-1083, - strand, RNAz p=0.918336 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 964-1083, - strand, RNAz p=0.918336 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 221-444, gnl|bosTau2|chr16 (14587702-14587925) | |
| 221-444, gnl|Hg17|chr5 (177978386-177978163) | |
| 221-444, gnl|Mm7|chr11 (51228556-51228779) | |
| 469-603, gnl|bosTau2|chr16 (14589439-14589574) | |
| 469-603, gnl|canFam2|chr11 (5977079-5976977) | |
| 469-603, gnl|danRer3|chr6 (31162727-31162829) | |
| 469-603, gnl|dasNov1|scaffold_37798 (1445-1344) | |
| 469-603, gnl|echTel1|scaffold_274417 (6347-6448) | |
| 469-603, gnl|fr1|chrUn (192685129-192685034) | |
| 469-603, gnl|galGal2|chr13 (12930647-12930750) | |
| 469-603, gnl|hg17|chr5 (177976484-177976586) | |
| 469-603, gnl|Hg17|chr5 (177976623-177976488) | |
| 469-603, gnl|loxAfr1|scaffold_150285 (82-185) | |
| 469-603, gnl|mm7|chr11 (51230390-51230287) | |
| 469-603, gnl|Mm7|chr11 (51230249-51230384) | |
| 469-603, gnl|monDom2|scaffold_6 (16234497-16234397) | |
| 469-603, gnl|oryCun1|scaffold_176986 (82806-82909) | |
| 469-603, gnl|panTro1|chr4_random (24316608-24316710) | |
| 469-603, gnl|rheMac2|chr6 (175200003-175200105) | |
| 469-603, gnl|rn3|chr10 (36795479-36795376) | |
| 469-603, gnl|tetNig1|chr1 (831587-831492) | |
| 469-603, gnl|xenTro1|scaffold_15 (290154-290057) | |
| 720-886, gnl|bosTau2|chr16 (14593111-14593277) | |
| 720-886, gnl|canFam2|chr11 (5981268-5981011) | |
| 720-886, gnl|danRer3|chr6 (31162106-31162361) | |
| 720-886, gnl|dasNov1|scaffold_37798 (6941-6682) | |
| 720-886, gnl|echTel1|scaffold_296405 (89227-88889) | |
| 720-886, gnl|fr1|chrUn (192685559-192685334) | |
| 720-886, gnl|galGal2|chr13 (12929223-12929476) | |
| 720-886, gnl|hg17|chr5 (177973058-177973317) | |
| 720-886, gnl|Hg17|chr5 (177973246-177973080) | |
| 720-886, gnl|loxAfr1|scaffold_12296 (22406-22667) | |
| 720-886, gnl|mm7|chr11 (51232356-51232102) | |
| 720-886, gnl|Mm7|chr11 (51232169-51232335) | |
| 720-886, gnl|monDom2|scaffold_6 (16236314-16236053) | |
| 720-886, gnl|oryCun1|scaffold_176986 (79808-80066) | |
| 720-886, gnl|panTro1|chr4_random (24313183-24313442) | |
| 720-886, gnl|rheMac2|chr6 (175196298-175196557) | |
| 720-886, gnl|rn3|chr10 (36797396-36797147) | |
| 720-886, gnl|tetNig1|chr1 (832044-831816) | |
| 720-886, gnl|xenTro1|scaffold_15 (294151-293903) | |
| 929-1109, gnl|bosTau2|chr16 (14593775-14593949) | |
| 929-1109, gnl|Hg17|chr5 (177972199-177972025) | |
| 929-1109, gnl|Mm7|chr11 (51232823-51233002) | |
| 1364-1800, gnl|bosTau2|chr16 (14600666-14601095) | |
| 1364-1800, gnl|Hg17|chr5 (177963366-177962940) | |
| 1364-1800, gnl|Mm7|chr11 (51238032-51238459) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 221-444, gnl|bosTau2|chr16 (14587702-14587925) | |
| 221-444, gnl|Hg17|chr5 (177978386-177978163) | |
| 221-444, gnl|Mm7|chr11 (51228556-51228779) | |
| 469-603, gnl|bosTau2|chr16 (14589439-14589574) | |
| 469-603, gnl|canFam2|chr11 (5977079-5976977) | |
| 469-603, gnl|danRer3|chr6 (31162727-31162829) | |
| 469-603, gnl|dasNov1|scaffold_37798 (1445-1344) | |
| 469-603, gnl|echTel1|scaffold_274417 (6347-6448) | |
| 469-603, gnl|fr1|chrUn (192685129-192685034) | |
| 469-603, gnl|galGal2|chr13 (12930647-12930750) | |
| 469-603, gnl|hg17|chr5 (177976484-177976586) | |
| 469-603, gnl|Hg17|chr5 (177976623-177976488) | |
| 469-603, gnl|loxAfr1|scaffold_150285 (82-185) | |
| 469-603, gnl|mm7|chr11 (51230390-51230287) | |
| 469-603, gnl|Mm7|chr11 (51230249-51230384) | |
| 469-603, gnl|monDom2|scaffold_6 (16234497-16234397) | |
| 469-603, gnl|oryCun1|scaffold_176986 (82806-82909) | |
| 469-603, gnl|panTro1|chr4_random (24316608-24316710) | |
| 469-603, gnl|rheMac2|chr6 (175200003-175200105) | |
| 469-603, gnl|rn3|chr10 (36795479-36795376) | |
| 469-603, gnl|tetNig1|chr1 (831587-831492) | |
| 469-603, gnl|xenTro1|scaffold_15 (290154-290057) | |
| 720-886, gnl|bosTau2|chr16 (14593111-14593277) | |
| 720-886, gnl|canFam2|chr11 (5981268-5981011) | |
| 720-886, gnl|danRer3|chr6 (31162106-31162361) | |
| 720-886, gnl|dasNov1|scaffold_37798 (6941-6682) | |
| 720-886, gnl|echTel1|scaffold_296405 (89227-88889) | |
| 720-886, gnl|fr1|chrUn (192685559-192685334) | |
| 720-886, gnl|galGal2|chr13 (12929223-12929476) | |
| 720-886, gnl|hg17|chr5 (177973058-177973317) | |
| 720-886, gnl|Hg17|chr5 (177973246-177973080) | |
| 720-886, gnl|loxAfr1|scaffold_12296 (22406-22667) | |
| 720-886, gnl|mm7|chr11 (51232356-51232102) | |
| 720-886, gnl|Mm7|chr11 (51232169-51232335) | |
| 720-886, gnl|monDom2|scaffold_6 (16236314-16236053) | |
| 720-886, gnl|oryCun1|scaffold_176986 (79808-80066) | |
| 720-886, gnl|panTro1|chr4_random (24313183-24313442) | |
| 720-886, gnl|rheMac2|chr6 (175196298-175196557) | |
| 720-886, gnl|rn3|chr10 (36797396-36797147) | |
| 720-886, gnl|tetNig1|chr1 (832044-831816) | |
| 720-886, gnl|xenTro1|scaffold_15 (294151-293903) | |
| 929-1109, gnl|bosTau2|chr16 (14593775-14593949) | |
| 929-1109, gnl|Hg17|chr5 (177972199-177972025) | |
| 929-1109, gnl|Mm7|chr11 (51232823-51233002) | |
| 1364-1800, gnl|bosTau2|chr16 (14600666-14601095) | |
| 1364-1800, gnl|Hg17|chr5 (177963366-177962940) | |
| 1364-1800, gnl|Mm7|chr11 (51238032-51238459) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| liv (0.585137) | |
| kid (0.518941) | |
| thg (0.507164) | |
| fco (0.471624) | |
| spl (0.429553) | |
| sug (0.381874) | |
| gul (0.355177) | |
| rec (0.346141) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| tes (0.207814) | |
| aor (0.195274) | |
| col (0.195008) | |
| sag (0.182715) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.585137) | |
| kid (0.518941) | |
| thg (0.507164) | |
| fco (0.471624) | |
| spl (0.429553) | |
| sug (0.381874) | |
| gul (0.355177) | |
| rec (0.346141) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| tes (0.207814) | |
| aor (0.195274) | |
| col (0.195008) | |
| sag (0.182715) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |