Non-Coding RNA Search

Ss1.1-ruio02_c9.5

Sequence:


               
               GAGAGGAAGAGCAGAGGCTTGCCCGACTTAATCAGCAAGAGCAGGAAGACTTGGAACTGG
CTATTGCACTCAGCAAATCTGAGATCTCAGAAGCATGAAGAATTCTCCTGTCCTTTGGTC
AGCCACACAGTACCCTCCCTCCCGAATACTGAAGCTATTTACAGTGTGTACCAAAACTCC
CTACAAGCATGGGAAAACAAAAGGTTTGAGATTCCTGTAAATGTGACAAAAAGTTTTGTT
TTGTTTTTTAACTCCATTTCAGATTTGTCTCCCCCCGCGCCCTACCCCGACCCCCGTAAA
AGCAGTAACTCAGACAACTTCACCTAGGCCCCTGTTCTGGTGTGCATTTAGTGTGAGCTT
TTGCCTGCCTGTGCTCCTTTTACTTGTAAAGCTAGAGCACCCAAGCTTCTGCCTTCTGGA
ATATAGAGAAGTAGTTTCACCCCTGTGCTACCCTTGTTCTGTAGTTACTCTAATGATAGC
TAGTGGGGTTCTTAAAGTTGGCAGTATTCTCCCTGGATTTAAATAGTTGAGAGAGGGGAA
GGGAAAGAACATCCTGTTTCTTTTACAGTAAAACAAATTGGGTAGTTTAAAAGTACATAT
TTGTATTTCCTTATAATCAGAGTACTGTTCAGTTTGGTTTTTATAGACAAGAAAAAATAT
TTTGCATAAATTGACTCCCCTATTGAAAAAGGGATGCTTTAGATTGACCCATTATAGCTT
CAGACTCCATCTTTTCCTAAATAAAAAATGTTAAAGCCTCATGTGTGAAATATATTTAAA
AAATTTTTTCTCTGAATTTAAAGAATTTTAGATAAACAGATACCTCTTCATAATTTTAAG
TGCTAGAGAGTGGAGAAAAATTATCACCTAAATTATACCCATCAATATAATACAAGGTAA
GCAAAAATCTTATGGCAGCCATTCTGCCATTCCTATGGCACTGTCCTCTTTAGTTCATGG
TAGGTTTATTTTTATACTTTTGAAGAAGAAACCTTAGCAGGCTAGAACTGGAAGGTACTT
TAACTTTTTGTATATATATATATATTTTGTTTTCTTTAATGAAGACGCAGTTACTTGAAA
TGTAAAAACATTCACTGAATACAAATGAAAAAAGTGACATTATTAAATCATATTATTTTT
TTCCCATCTTTGTGGATTAGAATAGTTTATTATCTTCATGTTTTTCACCTATAAAATTGG
CAGGCTAGCAAAAAATATGTTTTTTTTTTAATTGGGAGAGAAGAGACCTGACAGATTATC
AAAGTTCTTTATGTCTTAGAAGTTGTCTCCTGTAAAACTGACCTAGCAGACAAGCTGAAT
TTAAAAGGGACTCTGAAGTAGGCTGTAAATTATAAAGTAATCTTAATTTTTTTAACATCA
GTTACTAAAATAATGTATTGAAAACGAAGATAAAGGAAAATGCACCTAAAAACTAATTAA
ATGTCCCTGTGGTCACCAAGTAAAGGTGGTATTATTGATCTGTGTTAATCAGGGTGGCTG
ATTGTCTAGCCTATGAATAAATCCCCAAATATCCAGTTCATTTCATCTTGAAATGGTGCT
TTTTTTCTCTCCACACAATTGGACTGCTGCATTTCAAAAAACTTAAACCACTTTCTTGCA
CTGCTAACTTTTTTCTACTTTTATAAATTGGAACATCTCGGCATGGAAGTCATACATGTG
AAGCAAGGGCTGAATCATAATCACAAGGCTTTAATTTTGATGAACAAATTCAGTAATAAG
GGTATACTGCAAAAAGTTGATTGAGAAGGTAGTGTTGGGACTTGTGATAGGTAGTGGTTT
TTGGGTTTTTTTTCTTCCCCTTACATTTGAGGAGAAAAGGTAAGTTGACTTGAACAACCT
TTTGCACTGGGAAAATGAACAGATGTTTGAAATGGTTTTAAAATCTTTTTTTTTTTTTTT
AATTAAAAAACACTCTGGAAAATACTAAATATCTGTAACTTAAAAACACCAACTTTTGAT
GTAATAAATATACCCTAATCTTATGTGTGTTTAACTGGATTACATAGATTCTTATCTTTT
GTTAAAATGTGTATACTCAGTGGACCAATATAATATGAAAGTATGTATATATTATATAAA
AATATATATATATATATATATCTAAATCTCCATGCTCACTTGTGTAGGATGAATGTCTTA
GAGTTATTTGTGATTATATTTTACGTTGTTGACTGACTCCAGAGCCTGTGCTTGGAAAGG
ACAGATAAGTATTCGGAGAGCTAAGTGGCACTACTTACAAAGTTTTAACCATCTTCTACC
TACTTGTTCAAGTTTGAGTTCTCTTTATAGAACTTTCTCCTCTGTTTCAAACTTCTAAAT
TGTAGCCTGTAATTATGAGAACAATAAACTTTCAGTAATAATAAACCATACTATCCGTCC
GTCCTATCTGAAATGGAGTTTTGCATGGTTCTCTGTTATGTCCATGCTGTGTCCACGGAG
GGGTAGGCATACAGTCAGCACAGATGAATATGTGTAAAGTGCTTGAGACAGTACCTGGTG
TAGAATAAATACTCAATAAATGTTAACTCTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGAAGAGCAGAGGCTTGCCCGACTTAATCAGCAAGAGCAGGAAGACTTGGAACTGG
CTATTGCACTCAGCAAATCTGAGATCTCAGAAGCATGAAGAATTCTCCTGTCCTTTGGTC
AGCCACACAGTACCCTCCCTCCCGAATACTGAAGCTATTTACAGTGTGTACCAAAACTCC
CTACAAGCATGGGAAAACAAAAGGTTTGAGATTCCTGTAAATGTGACAAAAAGTTTTGTT
TTGTTTTTTAACTCCATTTCAGATTTGTCTCCCCCCGCGCCCTACCCCGACCCCCGTAAA
AGCAGTAACTCAGACAACTTCACCTAGGCCCCTGTTCTGGTGTGCATTTAGTGTGAGCTT
TTGCCTGCCTGTGCTCCTTTTACTTGTAAAGCTAGAGCACCCAAGCTTCTGCCTTCTGGA
ATATAGAGAAGTAGTTTCACCCCTGTGCTACCCTTGTTCTGTAGTTACTCTAATGATAGC
TAGTGGGGTTCTTAAAGTTGGCAGTATTCTCCCTGGATTTAAATAGTTGAGAGAGGGGAA
GGGAAAGAACATCCTGTTTCTTTTACAGTAAAACAAATTGGGTAGTTTAAAAGTACATAT
TTGTATTTCCTTATAATCAGAGTACTGTTCAGTTTGGTTTTTATAGACAAGAAAAAATAT
TTTGCATAAATTGACTCCCCTATTGAAAAAGGGATGCTTTAGATTGACCCATTATAGCTT
CAGACTCCATCTTTTCCTAAATAAAAAATGTTAAAGCCTCATGTGTGAAATATATTTAAA
AAATTTTTTCTCTGAATTTAAAGAATTTTAGATAAACAGATACCTCTTCATAATTTTAAG
TGCTAGAGAGTGGAGAAAAATTATCACCTAAATTATACCCATCAATATAATACAAGGTAA
GCAAAAATCTTATGGCAGCCATTCTGCCATTCCTATGGCACTGTCCTCTTTAGTTCATGG
TAGGTTTATTTTTATACTTTTGAAGAAGAAACCTTAGCAGGCTAGAACTGGAAGGTACTT
TAACTTTTTGTATATATATATATATTTTGTTTTCTTTAATGAAGACGCAGTTACTTGAAA
TGTAAAAACATTCACTGAATACAAATGAAAAAAGTGACATTATTAAATCATATTATTTTT
TTCCCATCTTTGTGGATTAGAATAGTTTATTATCTTCATGTTTTTCACCTATAAAATTGG
CAGGCTAGCAAAAAATATGTTTTTTTTTTAATTGGGAGAGAAGAGACCTGACAGATTATC
AAAGTTCTTTATGTCTTAGAAGTTGTCTCCTGTAAAACTGACCTAGCAGACAAGCTGAAT
TTAAAAGGGACTCTGAAGTAGGCTGTAAATTATAAAGTAATCTTAATTTTTTTAACATCA
GTTACTAAAATAATGTATTGAAAACGAAGATAAAGGAAAATGCACCTAAAAACTAATTAA
ATGTCCCTGTGGTCACCAAGTAAAGGTGGTATTATTGATCTGTGTTAATCAGGGTGGCTG
ATTGTCTAGCCTATGAATAAATCCCCAAATATCCAGTTCATTTCATCTTGAAATGGTGCT
TTTTTTCTCTCCACACAATTGGACTGCTGCATTTCAAAAAACTTAAACCACTTTCTTGCA
CTGCTAACTTTTTTCTACTTTTATAAATTGGAACATCTCGGCATGGAAGTCATACATGTG
AAGCAAGGGCTGAATCATAATCACAAGGCTTTAATTTTGATGAACAAATTCAGTAATAAG
GGTATACTGCAAAAAGTTGATTGAGAAGGTAGTGTTGGGACTTGTGATAGGTAGTGGTTT
TTGGGTTTTTTTTCTTCCCCTTACATTTGAGGAGAAAAGGTAAGTTGACTTGAACAACCT
TTTGCACTGGGAAAATGAACAGATGTTTGAAATGGTTTTAAAATCTTTTTTTTTTTTTTT
AATTAAAAAACACTCTGGAAAATACTAAATATCTGTAACTTAAAAACACCAACTTTTGAT
GTAATAAATATACCCTAATCTTATGTGTGTTTAACTGGATTACATAGATTCTTATCTTTT
GTTAAAATGTGTATACTCAGTGGACCAATATAATATGAAAGTATGTATATATTATATAAA
AATATATATATATATATATATCTAAATCTCCATGCTCACTTGTGTAGGATGAATGTCTTA
GAGTTATTTGTGATTATATTTTACGTTGTTGACTGACTCCAGAGCCTGTGCTTGGAAAGG
ACAGATAAGTATTCGGAGAGCTAAGTGGCACTACTTACAAAGTTTTAACCATCTTCTACC
TACTTGTTCAAGTTTGAGTTCTCTTTATAGAACTTTCTCCTCTGTTTCAAACTTCTAAAT
TGTAGCCTGTAATTATGAGAACAATAAACTTTCAGTAATAATAAACCATACTATCCGTCC
GTCCTATCTGAAATGGAGTTTTGCATGGTTCTCTGTTATGTCCATGCTGTGTCCACGGAG
GGGTAGGCATACAGTCAGCACAGATGAATATGTGTAAAGTGCTTGAGACAGTACCTGGTG
TAGAATAAATACTCAATAAATGTTAACTCTTAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2548, gnl|bosTau2|chr3 (67183054-67185579)
               

               
               1-2548, gnl|Hg17|chr1 (51534490-51531958)
               

               
               1-2548, gnl|Mm7|chr4 (108761807-108764241)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2548, gnl|bosTau2|chr3 (67183054-67185579)
               

               
               1-2548, gnl|Hg17|chr1 (51534490-51531958)
               

               
               1-2548, gnl|Mm7|chr4 (108761807-108764241)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               vin (0.997672)
               

               
               fco (0.628832)
               

               
               isp (0.601504)
               

               
               pro (0.512033)
               

               
               spl (0.429553)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               fco (0.628832)
               

               
               isp (0.601504)
               

               
               pro (0.512033)
               

               
               spl (0.429553)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-2548, gnl\|bosTau2\|chr3 (67183054-67185579)
	1-2548, gnl\|Hg17\|chr1 (51534490-51531958)
	1-2548, gnl\|Mm7\|chr4 (108761807-108764241)

	vin (0.997672)
	fco (0.628832)
	isp (0.601504)
	pro (0.512033)
	spl (0.429553)
	lnt (0.426925)
	amn (0.417711)
	kid (0.389206)
	bla (0.373042)
	rec (0.346141)
	spc (0.340097)
	fhi (0.339155)
	sme (0.305437)
	hyp (0.285673)
	ssp (0.271039)
	lyg (0.266205)
	ova (0.258264)
	ece (0.229305)
	tes (0.207814)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	sin (0.174948)
	nje (0.16592)
	cki (0.165235)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	ste (0.135208)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	eru (0.120048)
	cbl (0.114797)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)