Ss1.1-ruio02_f8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGGTCTGAGCGCGGGGCCCGACCGTCCGGAAAGCTGGAGCTGCGGGTGGGGAACATGT CGGATTCAGAGCTCGGCAGGAAGTGGGACCGGTGCTTGGCGGATGCGGTCGTGAAGATAG GTACTGGTTTTGGATTAGGACTCGTTTTCTCACTTACCTTCTTTAAAAGAAGAATGTGGC CATTGGCCTTTGGTTCTGGAATGGGATTGGGAATGGCCTACTCCAACTGTCAGCATGATT TCCAGGCTCCATATCTACTACATGGAAAATATGTCAAAGAGCAGTGACACCCCCCTGAGA ACATCCCGGTGGGAGGGAAAGAGAAATCCCGTTTATTCCTCAGGAATACTGAAGTGCCCT GGAGTAAGCTGACGTTCTTCTGTAACAATGTTATCAGTAATGCTTTCCACTCCAGCACAC TGTTTATGTATTTGAAACCAAGTCTGTTTCTTGTTTTGTATTTTCTCTCTGGAAATTGCG AGGAGGTGGTCTTAAAAGAAATAAATTAAACAGAAATAGGCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGGTCTGAGCGCGGGGCCCGACCGTCCGGAAAGCTGGAGCTGCGGGTGGGGAACATGT CGGATTCAGAGCTCGGCAGGAAGTGGGACCGGTGCTTGGCGGATGCGGTCGTGAAGATAG GTACTGGTTTTGGATTAGGACTCGTTTTCTCACTTACCTTCTTTAAAAGAAGAATGTGGC CATTGGCCTTTGGTTCTGGAATGGGATTGGGAATGGCCTACTCCAACTGTCAGCATGATT TCCAGGCTCCATATCTACTACATGGAAAATATGTCAAAGAGCAGTGACACCCCCCTGAGA ACATCCCGGTGGGAGGGAAAGAGAAATCCCGTTTATTCCTCAGGAATACTGAAGTGCCCT GGAGTAAGCTGACGTTCTTCTGTAACAATGTTATCAGTAATGCTTTCCACTCCAGCACAC TGTTTATGTATTTGAAACCAAGTCTGTTTCTTGTTTTGTATTTTCTCTCTGGAAATTGCG AGGAGGTGGTCTTAAAAGAAATAAATTAAACAGAAATAGGCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 3-122, gnl|bosTau2|chr2 (61492303-61492429) | |
| 3-122, gnl|canFam2|chr36 (3507803-3507895) | |
| 3-122, gnl|canFam2|chr36 (3507810-3507897) | |
| 3-122, gnl|dasNov1|scaffold_41866 (6456-6558) | |
| 3-122, gnl|dasNov1|scaffold_41866 (6463-6542) | |
| 3-122, gnl|echTel1|scaffold_282399 (15176-15263) | |
| 3-122, gnl|echTel1|scaffold_282399 (15183-15249) | |
| 3-122, gnl|galGal2|chr2 (113997755-113997686) | |
| 3-122, gnl|galGal2|chr8 (8703203-8703109) | |
| 3-122, gnl|Hg17|chr1 (19668792-19668911) | |
| 3-122, gnl|hg17|chr13 (31968879-31968966) | |
| 3-122, gnl|hg17|chr17 (60174012-60174114) | |
| 3-122, gnl|loxAfr1|scaffold_8328 (74220-74118) | |
| 3-122, gnl|loxAfr1|scaffold_8328 (74213-74131) | |
| 3-122, gnl|mm7|chr4 (61707761-61707693) | |
| 3-122, gnl|mm7|chr4 (61707754-61707684) | |
| 3-122, gnl|Mm7|chr4 (138509473-138509361) | |
| 3-122, gnl|oryCun1|scaffold_214214 (43315-43393) | |
| 3-122, gnl|oryCun1|scaffold_214214 (43322-43393) | |
| 3-122, gnl|panTro1|chr14 (31167590-31167677) | |
| 3-122, gnl|panTro1|chr19 (63554124-63554226) | |
| 3-122, gnl|rheMac2|chr16 (60287895-60287976) | |
| 3-122, gnl|rheMac2|chr17 (11866565-11866652) | |
| 3-122, gnl|rn3|chr6 (95086202-95086100) | |
| 3-122, gnl|rn3|chr6 (95086195-95086112) | |
| 279-511, gnl|bosTau2|chr2 (61529434-61529658) | |
| 279-511, gnl|canFam2|chr2 (81963239-81962995) | |
| 279-511, gnl|canFam2|chr36 (3507399-3507641) | |
| 279-511, gnl|canFam2|chr36 (3507640-3507422) | |
| 279-511, gnl|dasNov1|scaffold_41866 (6295-6047) | |
| 279-511, gnl|dasNov1|scaffold_41866 (6058-6295) | |
| 279-511, gnl|dasNov1|scaffold_41866 (6295-6080) | |
| 279-511, gnl|echTel1|scaffold_282399 (14776-15014) | |
| 279-511, gnl|echTel1|scaffold_282399 (15013-14796) | |
| 279-511, gnl|echTel1|scaffold_43354 (995-758) | |
| 279-511, gnl|galGal2|chr21 (4595782-4596012) | |
| 279-511, gnl|galGal2|chr21 (4596016-4595772) | |
| 279-511, gnl|hg17|chr1 (19698194-19698435) | |
| 279-511, gnl|Hg17|chr1 (19698193-19698423) | |
| 279-511, gnl|hg17|chr17 (60173616-60173855) | |
| 279-511, gnl|hg17|chr4 (79657761-79657980) | |
| 279-511, gnl|loxAfr1|scaffold_18283 (52001-52249) | |
| 279-511, gnl|loxAfr1|scaffold_18283 (52238-51998) | |
| 279-511, gnl|loxAfr1|scaffold_18283 (51997-52218) | |
| 279-511, gnl|mm7|chr4 (138482454-138482230) | |
| 279-511, gnl|mm7|chr4 (61708127-61707916) | |
| 279-511, gnl|mm7|chr4 (61707915-61708112) | |
| 279-511, gnl|Mm7|chr4 (138482453-138482241) | |
| 279-511, gnl|monDom2|scaffold_90 (716367-716604) | |
| 279-511, gnl|monDom2|scaffold_90 (716601-716358) | |
| 279-511, gnl|monDom2|scaffold_90 (716357-716572) | |
| 279-511, gnl|oryCun1|scaffold_199019 (96484-96266) | |
| 279-511, gnl|oryCun1|scaffold_205606 (44191-43965) | |
| 279-511, gnl|oryCun1|scaffold_214214 (42908-43152) | |
| 279-511, gnl|panTro1|chr1 (19990331-19990572) | |
| 279-511, gnl|panTro1|chr19 (63553727-63553967) | |
| 279-511, gnl|panTro1|chr3 (54071846-54071627) | |
| 279-511, gnl|rheMac2|chr1 (22277388-22277629) | |
| 279-511, gnl|rheMac2|chr16 (60287494-60287733) | |
| 279-511, gnl|rheMac2|chr5 (51229750-51229533) | |
| 279-511, gnl|rn3|chr5 (157896510-157896283) | |
| 279-511, gnl|rn3|chr6 (95086656-95086364) | |
| 279-511, gnl|rn3|chr6 (95086363-95086618) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-122, gnl|bosTau2|chr2 (61492303-61492429) | |
| 3-122, gnl|canFam2|chr36 (3507803-3507895) | |
| 3-122, gnl|canFam2|chr36 (3507810-3507897) | |
| 3-122, gnl|dasNov1|scaffold_41866 (6456-6558) | |
| 3-122, gnl|dasNov1|scaffold_41866 (6463-6542) | |
| 3-122, gnl|echTel1|scaffold_282399 (15176-15263) | |
| 3-122, gnl|echTel1|scaffold_282399 (15183-15249) | |
| 3-122, gnl|galGal2|chr2 (113997755-113997686) | |
| 3-122, gnl|galGal2|chr8 (8703203-8703109) | |
| 3-122, gnl|Hg17|chr1 (19668792-19668911) | |
| 3-122, gnl|hg17|chr13 (31968879-31968966) | |
| 3-122, gnl|hg17|chr17 (60174012-60174114) | |
| 3-122, gnl|loxAfr1|scaffold_8328 (74220-74118) | |
| 3-122, gnl|loxAfr1|scaffold_8328 (74213-74131) | |
| 3-122, gnl|mm7|chr4 (61707761-61707693) | |
| 3-122, gnl|mm7|chr4 (61707754-61707684) | |
| 3-122, gnl|Mm7|chr4 (138509473-138509361) | |
| 3-122, gnl|oryCun1|scaffold_214214 (43315-43393) | |
| 3-122, gnl|oryCun1|scaffold_214214 (43322-43393) | |
| 3-122, gnl|panTro1|chr14 (31167590-31167677) | |
| 3-122, gnl|panTro1|chr19 (63554124-63554226) | |
| 3-122, gnl|rheMac2|chr16 (60287895-60287976) | |
| 3-122, gnl|rheMac2|chr17 (11866565-11866652) | |
| 3-122, gnl|rn3|chr6 (95086202-95086100) | |
| 3-122, gnl|rn3|chr6 (95086195-95086112) | |
| 279-511, gnl|bosTau2|chr2 (61529434-61529658) | |
| 279-511, gnl|canFam2|chr2 (81963239-81962995) | |
| 279-511, gnl|canFam2|chr36 (3507399-3507641) | |
| 279-511, gnl|canFam2|chr36 (3507640-3507422) | |
| 279-511, gnl|dasNov1|scaffold_41866 (6295-6047) | |
| 279-511, gnl|dasNov1|scaffold_41866 (6058-6295) | |
| 279-511, gnl|dasNov1|scaffold_41866 (6295-6080) | |
| 279-511, gnl|echTel1|scaffold_282399 (14776-15014) | |
| 279-511, gnl|echTel1|scaffold_282399 (15013-14796) | |
| 279-511, gnl|echTel1|scaffold_43354 (995-758) | |
| 279-511, gnl|galGal2|chr21 (4595782-4596012) | |
| 279-511, gnl|galGal2|chr21 (4596016-4595772) | |
| 279-511, gnl|hg17|chr1 (19698194-19698435) | |
| 279-511, gnl|Hg17|chr1 (19698193-19698423) | |
| 279-511, gnl|hg17|chr17 (60173616-60173855) | |
| 279-511, gnl|hg17|chr4 (79657761-79657980) | |
| 279-511, gnl|loxAfr1|scaffold_18283 (52001-52249) | |
| 279-511, gnl|loxAfr1|scaffold_18283 (52238-51998) | |
| 279-511, gnl|loxAfr1|scaffold_18283 (51997-52218) | |
| 279-511, gnl|mm7|chr4 (138482454-138482230) | |
| 279-511, gnl|mm7|chr4 (61708127-61707916) | |
| 279-511, gnl|mm7|chr4 (61707915-61708112) | |
| 279-511, gnl|Mm7|chr4 (138482453-138482241) | |
| 279-511, gnl|monDom2|scaffold_90 (716367-716604) | |
| 279-511, gnl|monDom2|scaffold_90 (716601-716358) | |
| 279-511, gnl|monDom2|scaffold_90 (716357-716572) | |
| 279-511, gnl|oryCun1|scaffold_199019 (96484-96266) | |
| 279-511, gnl|oryCun1|scaffold_205606 (44191-43965) | |
| 279-511, gnl|oryCun1|scaffold_214214 (42908-43152) | |
| 279-511, gnl|panTro1|chr1 (19990331-19990572) | |
| 279-511, gnl|panTro1|chr19 (63553727-63553967) | |
| 279-511, gnl|panTro1|chr3 (54071846-54071627) | |
| 279-511, gnl|rheMac2|chr1 (22277388-22277629) | |
| 279-511, gnl|rheMac2|chr16 (60287494-60287733) | |
| 279-511, gnl|rheMac2|chr5 (51229750-51229533) | |
| 279-511, gnl|rn3|chr5 (157896510-157896283) | |
| 279-511, gnl|rn3|chr6 (95086656-95086364) | |
| 279-511, gnl|rn3|chr6 (95086363-95086618) |
| Expressed library(ies): 63 entry(ies) | More info |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
| hea (0.817996) | |
| nep (0.7357) | |
| duo (0.691204) | |
| mcp (0.682594) | |
| spc (0.680195) | |
| ssp (0.677599) | |
| vin (0.665115) | |
| col (0.585023) | |
| che (0.545256) | |
| ton (0.526501) | |
| fbs (0.526039) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| ecc (0.46014) | |
| isp (0.451128) | |
| nms (0.427716) | |
| mas (0.42061) | |
| hlv (0.417769) | |
| ova (0.387397) | |
| sto (0.359648) | |
| fty (0.351679) | |
| med (0.348756) | |
| rec (0.346141) | |
| cje (0.330469) | |
| csp (0.322373) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| cst (0.280073) | |
| fce (0.271592) | |
| kid (0.259471) | |
| thg (0.253582) | |
| cly (0.241284) | |
| tes (0.207814) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.817996) | |
| nep (0.7357) | |
| duo (0.691204) | |
| mcp (0.682594) | |
| spc (0.680195) | |
| ssp (0.677599) | |
| vin (0.665115) | |
| col (0.585023) | |
| che (0.545256) | |
| ton (0.526501) | |
| fbs (0.526039) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| ecc (0.46014) | |
| isp (0.451128) | |
| nms (0.427716) | |
| mas (0.42061) | |
| hlv (0.417769) | |
| ova (0.387397) | |
| sto (0.359648) | |
| fty (0.351679) | |
| med (0.348756) | |
| rec (0.346141) | |
| cje (0.330469) | |
| csp (0.322373) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| cst (0.280073) | |
| fce (0.271592) | |
| kid (0.259471) | |
| thg (0.253582) | |
| cly (0.241284) | |
| tes (0.207814) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |