Non-Coding RNA Search

Ss1.1-ruio02_g2.5

Sequence:


               
               CGCCCCTGGATGCCGCTCTGCCCCGGCGCGGCAGCCGCCGATCGCAGCACAGGAGCCGCC
GCCGCCGCCGCGGTTGATGTGGTTGGCCCGGGGCTTGTGAGGCCGCCAAGATGCCGCAGT
CCAAGTCCCGGAAGATCGCGATCCTGGGCTACCGGTCTGTGGGGAAATCCTCGCTGACGA
TTCAGTTTGTCGAAGGCCAATTTGTTGACTCCTACGATCCAACTATAGAAAACACTTTCA
CAAAATTGATCACAGTAAATGGACAAGAATATCATCTTCAACTTGTAGACACAGCTGGGC
AGGATGAATATTCCATCTTCCCTCAGACATACTCCATAGATATTAACGGTTATATCCTCG
TGTATTCTGTTACATCAATCAAAAGTTTTGAAGTGATTAAAGTCATCCATGGCAAATTGT
TGGACATGGTGGGGAAAGTGCAAATACCTATTATGTTGGTCGGGAATAAGAAAGACCTAC
ATATGGAAAGGGTGATCAGTTATGAAGAAGGGAAAGCGTTAGCAGAATCTTGGAATGCAG
CTTTTTTGGAATCTTCTGCTAAAGAAAATCAGACTGCTGTTGATGTCTTTAGAAGGATAA
TTTTGGAGGCAGAAAAAATCGATGGCGCTGCTTCACAAGGCAAGTCGTCCTGCTCGGTGA
TGTGAGCCTGCGCAGAACCGAGGACACTGGGACTCTCCCGCCTGAGGAAGCAAACCGTCC
TTGTCCTTCAAGATAAACTCTGCTCCATTTCTCTTCTGTTAACCTGAAAGATTTCATTTG
GGTCAGAGCTTCTCCCCCACCACCCCCCTTTCAGATTATGTTAAACTCTGACTCTGTCCA
AATGAGTTCACTTCCATTTTCAAATTTTAAGCAATCATATTTTCAATTTATATATTGTAT
TTCTTAATAATATTATGACCAAGAATTTTATTGCATTAATTTTTCAGTGTAGTTTGTTGT
TTAAAATAATGTAATCATCAAAATGATACATATTGTTACACTACTATTAACTAGGCTTCG
ATATATCAGTGTTTATTTCATTGTGTTAAATGTATACTTGTAAATAAAATAGCTGCAAAC
CTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCTGGATGCCGCTCTGCCCCGGCGCGGCAGCCGCCGATCGCAGCACAGGAGCCGCC
GCCGCCGCCGCGGTTGATGTGGTTGGCCCGGGGCTTGTGAGGCCGCCAAGATGCCGCAGT
CCAAGTCCCGGAAGATCGCGATCCTGGGCTACCGGTCTGTGGGGAAATCCTCGCTGACGA
TTCAGTTTGTCGAAGGCCAATTTGTTGACTCCTACGATCCAACTATAGAAAACACTTTCA
CAAAATTGATCACAGTAAATGGACAAGAATATCATCTTCAACTTGTAGACACAGCTGGGC
AGGATGAATATTCCATCTTCCCTCAGACATACTCCATAGATATTAACGGTTATATCCTCG
TGTATTCTGTTACATCAATCAAAAGTTTTGAAGTGATTAAAGTCATCCATGGCAAATTGT
TGGACATGGTGGGGAAAGTGCAAATACCTATTATGTTGGTCGGGAATAAGAAAGACCTAC
ATATGGAAAGGGTGATCAGTTATGAAGAAGGGAAAGCGTTAGCAGAATCTTGGAATGCAG
CTTTTTTGGAATCTTCTGCTAAAGAAAATCAGACTGCTGTTGATGTCTTTAGAAGGATAA
TTTTGGAGGCAGAAAAAATCGATGGCGCTGCTTCACAAGGCAAGTCGTCCTGCTCGGTGA
TGTGAGCCTGCGCAGAACCGAGGACACTGGGACTCTCCCGCCTGAGGAAGCAAACCGTCC
TTGTCCTTCAAGATAAACTCTGCTCCATTTCTCTTCTGTTAACCTGAAAGATTTCATTTG
GGTCAGAGCTTCTCCCCCACCACCCCCCTTTCAGATTATGTTAAACTCTGACTCTGTCCA
AATGAGTTCACTTCCATTTTCAAATTTTAAGCAATCATATTTTCAATTTATATATTGTAT
TTCTTAATAATATTATGACCAAGAATTTTATTGCATTAATTTTTCAGTGTAGTTTGTTGT
TTAAAATAATGTAATCATCAAAATGATACATATTGTTACACTACTATTAACTAGGCTTCG
ATATATCAGTGTTTATTTCATTGTGTTAAATGTATACTTGTAAATAAAATAGCTGCAAAC
CTTAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6981476|ref|NP_037348.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6981476|ref|NP_037348.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               720-878, - strand, RNAz p=0.979338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               720-878, - strand, RNAz p=0.979338

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               569-1086, gnl|bosTau2|chr4 (64140112-64140630)
               

               
               569-1086, gnl|Hg17|chr7 (150601949-150601440)
               

               
               569-1086, gnl|Mm7|chr5 (23844253-23843740)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               569-1086, gnl|bosTau2|chr4 (64140112-64140630)
               

               
               569-1086, gnl|Hg17|chr7 (150601949-150601440)
               

               
               569-1086, gnl|Mm7|chr5 (23844253-23843740)

Expressed library(ies): 68 entry(ies)

More info

Expressed library(ies): 68 entry(ies)

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               lyg (1.99654)
               

               
               aor (1.75747)
               

               
               sug (1.4002)
               

               
               che (1.22683)
               

               
               bfe (1.19886)
               

               
               tbr (1.07925)
               

               
               pro (1.02407)
               

               
               cbe (0.956938)
               

               
               sto (0.899119)
               

               
               cki (0.826173)
               

               
               hea (0.817996)
               

               
               ste (0.811249)
               

               
               cmu (0.745573)
               

               
               mgp (0.692042)
               

               
               cut (0.679694)
               

               
               ldo (0.679018)
               

               
               vin (0.665115)
               

               
               ova (0.645661)
               

               
               nms (0.641574)
               

               
               fco (0.628832)
               

               
               bla (0.621736)
               

               
               cte (0.58548)
               

               
               liv (0.585137)
               

               
               cbl (0.573987)
               

               
               fce (0.543183)
               

               
               ssp (0.542079)
               

               
               kid (0.518941)
               

               
               cje (0.495704)
               

               
               tra (0.492368)
               

               
               ski (0.440205)
               

               
               elu (0.385356)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               ret (0.257467)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

Expressed library(ies): 68 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.99654)
               

               
               aor (1.75747)
               

               
               sug (1.4002)
               

               
               che (1.22683)
               

               
               bfe (1.19886)
               

               
               tbr (1.07925)
               

               
               pro (1.02407)
               

               
               cbe (0.956938)
               

               
               sto (0.899119)
               

               
               cki (0.826173)
               

               
               hea (0.817996)
               

               
               ste (0.811249)
               

               
               cmu (0.745573)
               

               
               mgp (0.692042)
               

               
               cut (0.679694)
               

               
               ldo (0.679018)
               

               
               vin (0.665115)
               

               
               ova (0.645661)
               

               
               nms (0.641574)
               

               
               fco (0.628832)
               

               
               bla (0.621736)
               

               
               cte (0.58548)
               

               
               liv (0.585137)
               

               
               cbl (0.573987)
               

               
               fce (0.543183)
               

               
               ssp (0.542079)
               

               
               kid (0.518941)
               

               
               cje (0.495704)
               

               
               tra (0.492368)
               

               
               ski (0.440205)
               

               
               elu (0.385356)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               ret (0.257467)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)

	569-1086, gnl\|bosTau2\|chr4 (64140112-64140630)
	569-1086, gnl\|Hg17\|chr7 (150601949-150601440)
	569-1086, gnl\|Mm7\|chr5 (23844253-23843740)

	lyg (1.99654)
	aor (1.75747)
	sug (1.4002)
	che (1.22683)
	bfe (1.19886)
	tbr (1.07925)
	pro (1.02407)
	cbe (0.956938)
	sto (0.899119)
	cki (0.826173)
	hea (0.817996)
	ste (0.811249)
	cmu (0.745573)
	mgp (0.692042)
	cut (0.679694)
	ldo (0.679018)
	vin (0.665115)
	ova (0.645661)
	nms (0.641574)
	fco (0.628832)
	bla (0.621736)
	cte (0.58548)
	liv (0.585137)
	cbl (0.573987)
	fce (0.543183)
	ssp (0.542079)
	kid (0.518941)
	cje (0.495704)
	tra (0.492368)
	ski (0.440205)
	elu (0.385356)
	mgm (0.360685)
	gul (0.355177)
	ill (0.351185)
	duo (0.345602)
	ecc (0.345105)
	mcp (0.341297)
	spc (0.340097)
	sme (0.305437)
	lun (0.300978)
	jej (0.296765)
	pty (0.285429)
	cst (0.280073)
	ret (0.257467)
	ese (0.253004)
	eep (0.245128)
	pan (0.23596)
	ece (0.229305)
	cty (0.20816)
	tes (0.207814)
	col (0.195008)
	sag (0.182715)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	cag (0.151194)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	thg (0.126791)
	ebs (0.118301)