Non-Coding RNA Search

Ss1.1-ruio02_i20.5

Sequence:


               
               TAAAAATCACTTTTATAGAGAACGCCTTTCCCCGTAATACTACCCAGTGCTCAGATCAGT
CACGGGAGTACGGTCCTGAGAATGGAGGTGGGTGATGAGAGAGAAGTCCTCGTGAGGGCA
CTTTGTGTACCTGGAACCAAATCATACTGACTCTGCTTCTCTCCTGTGGGGTGCTGCATA
CATCTGAGTGGAAAGATGTCCTTGTTGAGCCTTTCGATGCAGTGACTTTGGGCCTCTGTG
GAATGTGGGGCACCTTGGACTTGCATTCCCACCATTAATTTTCTGTGTCATTGTCAATAA
TCTCAACCTGATGAAAAGGACTTTAAAGAGCTGGACTAACCTTTTTGGTTTTCTAAAACC
TCATTTTTGATCGCTAGCCAGATATGATTTCTTGGAAATTGGCTGAGTTTTCTAACTTGC
AACATTAAGCGGTTAAGGATAAATGGCCATGTCTAGTGTTACACTGAACTTTGTGGCAAA
TGTAACTAAAGAGCAGATGGATTCTACCGGGAATTAAAATGACCGCGTTCCATTCTCCTT
TTGGACTAGGGGGTGTTTAGCCTGGTCTCCAAAAAGACAGAGGTTTTCATCATGATCTTT
ATAAACTATTCTTGTTGCCGTTCCTTTATAAACCTGCATCCCCTTCAGTTTTATAAGGGA
AAGAAAATGAGGACCAAGTGACTCTTGCAAATGTTTATTGGATAAGAAGCTGAGACAAAG
CCGAGCCATGTCCTGAGGGATCGTTCTCATTTTCTTTGTGCCTAGTACAAAGTCTCAGAA
GTCTCACTTTAGTGTCGAGTATTTGCATCTACTCCCATCCTGTTTGCTCTTAGGGAAGAA
AATCAATTCTAATCACACTTTACCATGATGGAAGATGTTTCCTCATGAAAAATGCCAATA
CAGATTTTTTAAAAATCTATTCCAAATGCACTTTCTAATTTTTTGCTTTTGAAATAGCTT
CTTGGAACCAGGTTTATTGTATTTGTACTTAATTTTTGTTCTCATCTAAATGTGCGTTTT
CTGACAGTATAGAAGCTTTGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAATCACTTTTATAGAGAACGCCTTTCCCCGTAATACTACCCAGTGCTCAGATCAGT
CACGGGAGTACGGTCCTGAGAATGGAGGTGGGTGATGAGAGAGAAGTCCTCGTGAGGGCA
CTTTGTGTACCTGGAACCAAATCATACTGACTCTGCTTCTCTCCTGTGGGGTGCTGCATA
CATCTGAGTGGAAAGATGTCCTTGTTGAGCCTTTCGATGCAGTGACTTTGGGCCTCTGTG
GAATGTGGGGCACCTTGGACTTGCATTCCCACCATTAATTTTCTGTGTCATTGTCAATAA
TCTCAACCTGATGAAAAGGACTTTAAAGAGCTGGACTAACCTTTTTGGTTTTCTAAAACC
TCATTTTTGATCGCTAGCCAGATATGATTTCTTGGAAATTGGCTGAGTTTTCTAACTTGC
AACATTAAGCGGTTAAGGATAAATGGCCATGTCTAGTGTTACACTGAACTTTGTGGCAAA
TGTAACTAAAGAGCAGATGGATTCTACCGGGAATTAAAATGACCGCGTTCCATTCTCCTT
TTGGACTAGGGGGTGTTTAGCCTGGTCTCCAAAAAGACAGAGGTTTTCATCATGATCTTT
ATAAACTATTCTTGTTGCCGTTCCTTTATAAACCTGCATCCCCTTCAGTTTTATAAGGGA
AAGAAAATGAGGACCAAGTGACTCTTGCAAATGTTTATTGGATAAGAAGCTGAGACAAAG
CCGAGCCATGTCCTGAGGGATCGTTCTCATTTTCTTTGTGCCTAGTACAAAGTCTCAGAA
GTCTCACTTTAGTGTCGAGTATTTGCATCTACTCCCATCCTGTTTGCTCTTAGGGAAGAA
AATCAATTCTAATCACACTTTACCATGATGGAAGATGTTTCCTCATGAAAAATGCCAATA
CAGATTTTTTAAAAATCTATTCCAAATGCACTTTCTAATTTTTTGCTTTTGAAATAGCTT
CTTGGAACCAGGTTTATTGTATTTGTACTTAATTTTTGTTCTCATCTAAATGTGCGTTTT
CTGACAGTATAGAAGCTTTGTTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               637-755, + strand, RNAz p=0.93486

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               637-755, + strand, RNAz p=0.93486

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-1044, gnl|bosTau2|chr19 (16022325-16023338)
               

               
               11-1044, gnl|Mm7|chr11 (76809145-76808204)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1044, gnl|bosTau2|chr19 (16022325-16023338)
               

               
               11-1044, gnl|Mm7|chr11 (76809145-76808204)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               lyg (0.266205)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	11-1044, gnl\|bosTau2\|chr19 (16022325-16023338)
	11-1044, gnl\|Mm7\|chr11 (76809145-76808204)

	lyg (0.266205)
	duo (0.172801)
	mga (0.160205)
	lun (0.150489)
	spl (0.143184)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	spc (0.113366)