Non-Coding RNA Search

Ss1.1-ruio02_p24.5

Sequence:


               
               CTGACTTCTAGAGAACAGAACAGCATCTGGGAAACAGAGTCTCTGGCAATCCTGACCTTG
TGACTACCTGGTCCTCCTACTGTGCATGAAGATGAAGTTCCTACATCCCTTGTGAAATCT
TGAGAAATATATAAGCCAAATTTAAGTGACTTTAAACACAAACTGTGTAATGAGCCATTT
CTTTCTTGTGCACTTCCATGTGTGTTATGTTTTGATCCATCTCTTTCCATTTCTGGAAGT
TCTGCTCACCAGTGTTGGCATTGATTCTGTGGCCTTGTACAGTCAGCTTGTGTCCAGCTC
ATTTATTTCACCATGTCCCTGATCGAGGGAACATGAATTACCTGTCTCTGTGAGTTAAGC
AGCTCATGAGCAGCAAGTTATTGGAGAACGTAAATAAAGTCATAGAGCTCTCAAGGAAGT
AATAGCTTTGGTTTAATCATCTGCTTCTAAGGTGCCAATTTTTATATACTACTATATGTA
ATGATTTGTTCTAAATTGCTCAGTCCTTCTGGGGGAAAAGTGTAAGGATGTTTAGTGAAA
ATGACCATGTAAATTCTTGATTGACCAACATATTTTATATTTATACTAGAAACTCCCTCT
TTGATGGATTTGAATGAAGCTGGAAAGCTTGAGCATAATTCATGACTAGTTTGTATATTT
CTCCAAGCCCCAAAGTTTATTAGGGGTATGAATGCAGCACTTTATAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTTCTAGAGAACAGAACAGCATCTGGGAAACAGAGTCTCTGGCAATCCTGACCTTG
TGACTACCTGGTCCTCCTACTGTGCATGAAGATGAAGTTCCTACATCCCTTGTGAAATCT
TGAGAAATATATAAGCCAAATTTAAGTGACTTTAAACACAAACTGTGTAATGAGCCATTT
CTTTCTTGTGCACTTCCATGTGTGTTATGTTTTGATCCATCTCTTTCCATTTCTGGAAGT
TCTGCTCACCAGTGTTGGCATTGATTCTGTGGCCTTGTACAGTCAGCTTGTGTCCAGCTC
ATTTATTTCACCATGTCCCTGATCGAGGGAACATGAATTACCTGTCTCTGTGAGTTAAGC
AGCTCATGAGCAGCAAGTTATTGGAGAACGTAAATAAAGTCATAGAGCTCTCAAGGAAGT
AATAGCTTTGGTTTAATCATCTGCTTCTAAGGTGCCAATTTTTATATACTACTATATGTA
ATGATTTGTTCTAAATTGCTCAGTCCTTCTGGGGGAAAAGTGTAAGGATGTTTAGTGAAA
ATGACCATGTAAATTCTTGATTGACCAACATATTTTATATTTATACTAGAAACTCCCTCT
TTGATGGATTTGAATGAAGCTGGAAAGCTTGAGCATAATTCATGACTAGTTTGTATATTT
CTCCAAGCCCCAAAGTTTATTAGGGGTATGAATGCAGCACTTTATAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               103-206, - strand, RNAz p=0.875275

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-206, - strand, RNAz p=0.875275

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               157-298, - strand, RNAmicro p=0.985855
               

               
               174-283, + strand, RNAmicro p=0.930878

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               157-298, - strand, RNAmicro p=0.985855
               

               
               174-283, + strand, RNAmicro p=0.930878

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-708, gnl|bosTau2|chr9 (4819735-4820437)
               

               
               2-708, gnl|canFam2|chr1 (90089500-90088228)
               

               
               2-708, gnl|dasNov1|scaffold_25168 (6108-7375)
               

               
               2-708, gnl|echTel1|scaffold_318340 (173000-171733)
               

               
               2-708, gnl|galGal2|chrZ (15888838-15890191)
               

               
               2-708, gnl|hg17|chr9 (70376291-70377541)
               

               
               2-708, gnl|Hg17|chr9 (70377631-70376918)
               

               
               2-708, gnl|loxAfr1|scaffold_10295 (41205-39937)
               

               
               2-708, gnl|mm7|chr19 (22690852-22689519)
               

               
               2-708, gnl|Mm7|chr19 (22689444-22690171)
               

               
               2-708, gnl|monDom2|scaffold_17 (19293633-19292343)
               

               
               2-708, gnl|oryCun1|scaffold_213749 (10272-9010)
               

               
               2-708, gnl|panTro1|chr11 (54199337-54200588)
               

               
               2-708, gnl|rheMac2|chr15 (79307559-79308810)
               

               
               2-708, gnl|rn3|chr1 (226444232-226442986)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-708, gnl|bosTau2|chr9 (4819735-4820437)
               

               
               2-708, gnl|canFam2|chr1 (90089500-90088228)
               

               
               2-708, gnl|dasNov1|scaffold_25168 (6108-7375)
               

               
               2-708, gnl|echTel1|scaffold_318340 (173000-171733)
               

               
               2-708, gnl|galGal2|chrZ (15888838-15890191)
               

               
               2-708, gnl|hg17|chr9 (70376291-70377541)
               

               
               2-708, gnl|Hg17|chr9 (70377631-70376918)
               

               
               2-708, gnl|loxAfr1|scaffold_10295 (41205-39937)
               

               
               2-708, gnl|mm7|chr19 (22690852-22689519)
               

               
               2-708, gnl|Mm7|chr19 (22689444-22690171)
               

               
               2-708, gnl|monDom2|scaffold_17 (19293633-19292343)
               

               
               2-708, gnl|oryCun1|scaffold_213749 (10272-9010)
               

               
               2-708, gnl|panTro1|chr11 (54199337-54200588)
               

               
               2-708, gnl|rheMac2|chr15 (79307559-79308810)
               

               
               2-708, gnl|rn3|chr1 (226444232-226442986)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	157-298, - strand, RNAmicro p=0.985855
	174-283, + strand, RNAmicro p=0.930878

	2-708, gnl\|bosTau2\|chr9 (4819735-4820437)
	2-708, gnl\|canFam2\|chr1 (90089500-90088228)
	2-708, gnl\|dasNov1\|scaffold_25168 (6108-7375)
	2-708, gnl\|echTel1\|scaffold_318340 (173000-171733)
	2-708, gnl\|galGal2\|chrZ (15888838-15890191)
	2-708, gnl\|hg17\|chr9 (70376291-70377541)
	2-708, gnl\|Hg17\|chr9 (70377631-70376918)
	2-708, gnl\|loxAfr1\|scaffold_10295 (41205-39937)
	2-708, gnl\|mm7\|chr19 (22690852-22689519)
	2-708, gnl\|Mm7\|chr19 (22689444-22690171)
	2-708, gnl\|monDom2\|scaffold_17 (19293633-19292343)
	2-708, gnl\|oryCun1\|scaffold_213749 (10272-9010)
	2-708, gnl\|panTro1\|chr11 (54199337-54200588)
	2-708, gnl\|rheMac2\|chr15 (79307559-79308810)
	2-708, gnl\|rn3\|chr1 (226444232-226442986)